Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00952 ATGGAAGGCAAAGCAAGAAAAGCGCTTCTCTTTCTCTTCTTGGCTCTCGTCGTTTCTCTCTCTGCTGGTTTCTCAGACTCATCAATATGTGAAACACAGACTCTAGTAACCCATTCTCTTCCTCAACCTGCAACACTCTCATGGCCTGAATCTGAAACCATATCTGAAGCAGACCCATCATCTACCGTCATCTTGTCTGTTCCTTTACATCATGTAGATGCTTTAGCTTTCAACAAAACCGCTGAAGAGCTCTTTCAACTTCGGCTTCGAAGAGACTCTCTCAGAGTGAGATCACTCACTTCCATTGCCCACGAAGTTTCCTCTGTGAACCAGAGTCAAGTGAATCAACGTGGCTTTGGTTCTGGTTTCAGTAGTTCTGTCATTTCCGGACTCGCTCAGGGAAGTGGTGAGTACTTTGCGCGGTTGGGTGTTGGCACACCTCCAACGAACCTCTACCTGGTTTTGGACACTGGCAGTGACGTCATGTGGATCCAATGTGCTCCTTGCCAGAGATGTTACTCTCAGACCGACCCGGTCTTCGACCCGTCCAAATCCCGGTCCTTTGCCAGAATCCCATGCAGTTCACCACTCTGTCGTCGGCTTGACTCGGCCGGTTGCAACCAAAAGAACCTGTGTATCTACCAAGTCTCTTATGGTGACGGTTCCTTCACTCTTGGTGAGTTTTCCACCGAAACGTTAACGTTTCGTGGGAATAGAGTAGATCGAGTTGCAATCGGTTGCGGGCATGACAACGAAGGCCTCTTCGTTGGCGCCGCCGGTTTGCTTGGTCTAGGCCGGGGCAGACTCTCATTCCCATCTCAAACCGGCCACCAGTTCAGCCGTAAATTCTCATACTGCTTGGTGGACCGTAACTCTGCATCTCAAAAACCATCGTCGTTAGTCTTTGGTGAACCAGCCGTTTCTCGAACTGCTTTGTTTACTCCATTGCTGACAAACCCGAAGCTCGACACTTTTTACTACGTAGAACTTGTGGGTATCAGTGTAGGGGGTGCACCGGTTCCAGGCATAATCTCTTCACTTTTCAAGCTCGACCCGGCTGGTAGCGGAGGAGTTATTATCGATTCGGGCACCTCTGTGACCCGTTTGACCCGTCCTGCTTACATTGCCCTGAGGGATGCGTTCCGGAGCGGAGCATCCAGTTTGAATCGGGCACCCGAATTCTCACTGTTCGATACGTGCTATGACTTGTCAGGAAAGACGGAGGTGAAGGTGCCGACGGTGGTACTGCATTTTCGTGGTGCCGACGTGCCATTGCCGGCAGCTAATTACTTGATTCCTGTGGATAACAGTGGGACATTCTGTTTTGCTTTCGCGGGTACAACAGGTGGGTTGTCTATAATCGGCAACATCCAGCAACAAGGATTCCAGGTTGTTTATGACTTGCAGGGTTCCCGGGTCGGGTTTGCTCCACACGGATGTGCTTGA 1446 0.5048 MEGKARKALLFLFLALVVSLSAGFSDSSICETQTLVTHSLPQPATLSWPESETISEADPSSTVILSVPLHHVDALAFNKTAEELFQLRLRRDSLRVRSLTSIAHEVSSVNQSQVNQRGFGSGFSSSVISGLAQGSGEYFARLGVGTPPTNLYLVLDTGSDVMWIQCAPCQRCYSQTDPVFDPSKSRSFARIPCSSPLCRRLDSAGCNQKNLCIYQVSYGDGSFTLGEFSTETLTFRGNRVDRVAIGCGHDNEGLFVGAAGLLGLGRGRLSFPSQTGHQFSRKFSYCLVDRNSASQKPSSLVFGEPAVSRTALFTPLLTNPKLDTFYYVELVGISVGGAPVPGIISSLFKLDPAGSGGVIIDSGTSVTRLTRPAYIALRDAFRSGASSLNRAPEFSLFDTCYDLSGKTEVKVPTVVLHFRGADVPLPAANYLIPVDNSGTFCFAFAGTTGGLSIIGNIQQQGFQVVYDLQGSRVGFAPHGCA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00952 481 ProSiteProfiles Peptidase family A1 domain profile. 138 476 IPR033121 -
Pte4g00952 481 Gene3D Acid Proteases 121 302 IPR021109 -
Pte4g00952 481 FunFam Aspartyl protease family protein 2 304 480 - -
Pte4g00952 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 153 164 IPR001969 GO:0004190|GO:0006508
Pte4g00952 481 Pfam Xylanase inhibitor C-terminal 326 476 IPR032799 -
Pte4g00952 481 CDD cnd41_like 137 480 IPR033873 -
Pte4g00952 481 Gene3D Acid Proteases 303 481 IPR021109 -
Pte4g00952 481 FunFam aspartyl protease family protein 2 115 302 - -
Pte4g00952 481 Pfam Xylanase inhibitor N-terminal 138 303 IPR032861 -
Pte4g00952 481 SUPERFAMILY Acid proteases 131 480 IPR021109 -
Pte4g00952 481 PRINTS Pepsin (A1) aspartic protease family signature 358 369 IPR001461 GO:0004190|GO:0006508
Pte4g00952 481 PRINTS Pepsin (A1) aspartic protease family signature 452 467 IPR001461 GO:0004190|GO:0006508
Pte4g00952 481 PRINTS Pepsin (A1) aspartic protease family signature 144 164 IPR001461 GO:0004190|GO:0006508
Pte4g00952 481 PANTHER ASPARTYL PROTEASES 28 474 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00952 Pte-Chr4 40630773 40632749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00952 94 480 Miscellaneous Gene Families AT1G77480 28.132 8.12e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00952 K22683 - qsa:O6P43_027380 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00952 4 40630773 40632749 Pte4g00952 4 40630773 40632749 RCT