Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3003 ATGGCTCTGAATCTCTTTGTCTCTCCTAAATGCAAATGGACCGTTCCTCCTTCCACGATCGTGTTTGATAATGCTTCTTCTTCCAAGCTACCACTTGGTTCTTCTTCTTCATCTTCTTCAGCTTCTTCCGTTTACAGAAGTGTGAGTTTGAGGAGAAGTGGTAGTGTTGCGGTGAGATCAAGCTTGGAAACCGCGGGGCCCACGGTGACGGTGGGGAAGGTGACCGAGGTGAACAAGGATACGTTCTGGCCCATCGTTAACGCCGCCGGTGATAAAACCGTCGTCCTCGACATGTTCACCCAATGGTGTGGTCCCTGCAAAGTGATTGCTCCAAAGTATCAAGAATTAGCTGAGAAGAATCTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGATAACAAGCCTCTGGCAAAAGAACTTGGAATTAAAGTTGTTCCAACTTTTAAAATTCTGAAGGACAGCAAGATTGTGAAGGAAATTACTGGAGCAAAATATGATGACTTGGTCGCTGCCATAGAAACTGTCCGATCTAGCTAA 540 0.4537 MALNLFVSPKCKWTVPPSTIVFDNASSSKLPLGSSSSSSSASSVYRSVSLRRSGSVAVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQELAEKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIETVRSS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3003 179 Pfam Thioredoxin 74 174 IPR013766 -
Lja1g3003 179 PANTHER THIOREDOXIN F2, CHLOROPLASTIC 1 179 - -
Lja1g3003 179 ProSitePatterns Thioredoxin family active site. 95 113 IPR017937 -
Lja1g3003 179 ProSiteProfiles Thioredoxin domain profile. 51 178 IPR013766 -
Lja1g3003 179 CDD TRX_family 80 174 - -
Lja1g3003 179 Gene3D Glutaredoxin 58 178 - -
Lja1g3003 179 PANTHER THIOREDOXIN 1 179 - -
Lja1g3003 179 PRINTS Thioredoxin family signature 94 102 - -
Lja1g3003 179 PRINTS Thioredoxin family signature 102 111 - -
Lja1g3003 179 PRINTS Thioredoxin family signature 142 153 - -
Lja1g3003 179 SUPERFAMILY Thioredoxin-like 68 176 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3003 Lja-Chr1 36414863 36418254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3003 K03671 - gmx:100499776 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3003 1 36414863 36418254 Lja1g3003 1 36414863 36418254 ECH