Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1031 ATGAAGTCCAAACGAGACGTTCTATTTCTAGAGAGAGAAGCAAGCCGACGTGTTATCTCAATAATAACTTGTTATTTGCCGTTGAAAACGCGCAATGCCGACTTCCCCTGCTCCATCTCCCACTTCTCAATTCTTCTCACCATAAAACCCCCACGATTTTCCCAAAATAAAAGTGGGAGAAACTATAAAAGTTTCTATCTTTTTTTGAATTTTTTCAATAAATCTACCGTGATGGTGATGAAGATGGATCTGGGCAGATGGGTGTTGTGCTTTTGCTTATTGGCATTGTTCCTGCCCACAATTGTGTCCGGGAATGCGGTTTTCAGAGTGCAGCACAAGTTCAAGGGTCGTGGGAAGTCGTTGGATGCACTCAGGGCACATGACACTCGCCGTCACGGTAGAATTCTTTCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTGCAAGTTGATACAGGAAGTGACATATTATGGGTTAATTGTGCTGGATGTGACAGATGTCCCACAAAAAGCGACCTTGGTGTTGATCTAACTCTATATGATATGAAAGCCTCTACAACTTCAGATGCAGTTGGTTGTGATGATAATTTTTGTTCCTTATATGATGGTCCACTACCTGGTTGCAAACCGGGGTTGCAATGTCTATACAGTGTTCTTTATGGAGATGGGAGCTCAACCACAGGCTACTTTGTGCAAGATTTTGTACAATACAACAGAATTTCAGGAAACTTTCAAACCACACCAACTAATGGGACTGTAGTATTCGGATGTGGAAATAAACAATCTGGGGAGCTAGGCTCATCTTCTGAAGCACTTGATGGAATACTTGGTTTTGGACAAGCAAATTCGTCTATGCTTTCACAGCTAGCTTCATCTGGAAAGGTGAAAAAAGTATTTTCACACTGCTTGGATAATGTAGATGGAGGTGGAATTTTTGCTATTGGAGAAGTTGTGGAACCAAAAGTAAACATAACCCCGTTGGTACAAAATCAGGCACATTACAATGTTGTTATGAAGGAAATTGAGGTGGGTGGTGATCCTCTTGACGTTCCCTCAGATGCATTTGAATCTGGTGACCGGAAAGGCACAATAATTGACAGTGGCACAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAATGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGGAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGATGGAAAGGACTTGACTCTTTTGGGAGATCTTGTACTATCAAATAAGCTTGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACTGTTTGCTTGGACAAAAGAGAGGCTGGTTGGCCACTAGGCTGCGCTGA 1581 0.4225 MKSKRDVLFLEREASRRVISIITCYLPLKTRNADFPCSISHFSILLTIKPPRFSQNKSGRNYKSFYLFLNFFNKSTVMVMKMDLGRWVLCFCLLALFLPTIVSGNAVFRVQHKFKGRGKSLDALRAHDTRRHGRILSAVDLPLGGNGHPSEAGLYFAKIGIGTPSKDYYVQVDTGSDILWVNCAGCDRCPTKSDLGVDLTLYDMKASTTSDAVGCDDNFCSLYDGPLPGCKPGLQCLYSVLYGDGSSTTGYFVQDFVQYNRISGNFQTTPTNGTVVFGCGNKQSGELGSSSEALDGILGFGQANSSMLSQLASSGKVKKVFSHCLDNVDGGGIFAIGEVVEPKVNITPLVQNQAHYNVVMKEIEVGGDPLDVPSDAFESGDRKGTIIDSGTTLAYFPQEVYVPLIEKILSQQPDLRLHTVEQAFTCFDYTGNVDDGFPTVTLHFDKSISLTVYPHEYLFQVKEFEWCIGWQNSGAQTKDGKDLTLLGDLVLSNKLVVYDLEKQGIGWVEYNCLLGQKRGWLATRLR* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1031 526 Gene3D Acid Proteases 339 514 IPR021109 -
Vvi4g1031 526 PRINTS Pepsin (A1) aspartic protease family signature 385 396 IPR001461 GO:0004190|GO:0006508
Vvi4g1031 526 PRINTS Pepsin (A1) aspartic protease family signature 161 181 IPR001461 GO:0004190|GO:0006508
Vvi4g1031 526 PRINTS Pepsin (A1) aspartic protease family signature 484 499 IPR001461 GO:0004190|GO:0006508
Vvi4g1031 526 Gene3D Acid Proteases 137 338 IPR021109 -
Vvi4g1031 526 ProSiteProfiles Peptidase family A1 domain profile. 155 508 IPR033121 -
Vvi4g1031 526 FunFam Eukaryotic aspartyl protease family protein 338 517 - -
Vvi4g1031 526 PANTHER ASPARTYL PROTEASES 89 506 IPR001461 GO:0004190|GO:0006508
Vvi4g1031 526 FunFam Eukaryotic aspartyl protease family protein 145 337 - -
Vvi4g1031 526 CDD pepsin_A_like_plant 155 512 IPR034161 -
Vvi4g1031 526 SUPERFAMILY Acid proteases 151 512 IPR021109 -
Vvi4g1031 526 Pfam Xylanase inhibitor C-terminal 355 507 IPR032799 -
Vvi4g1031 526 Pfam Xylanase inhibitor N-terminal 155 337 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1031 Vvi-Chr4 17097036 17107556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1031 137 512 Miscellaneous Gene Families AT1G44130 29.648 5.24e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1031 - - vvi:100256470 1041.18