Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0861 . . . . . . . . . . . . . . . . . . . . . Arst9g00218 . . . . . Bva04g01127 . . . . . . . . . . . . Gma10g02248 . . . Gso10g2117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2014 . . . . . . . Mtr1g3778 . . . . . . . . . . . . . . . . . . Pvu7g0901 . . . . . . . . . . Tpr1g0724 . . . Tsu01g04453 . . . . . . . . . . . . .
Vvi16g0862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0863 . . . . . Adu09g02386 Aed1g2242 Aed7g0557 Aev05g2945 Aev09g2246 Ahy15g3504 Ahy19g3541 Aip05g03807 Aip09g04001 . . . Amo19g4455 . Apr6g0728 Arst10g03867 Arst9g03143 . . . . . Bva04g01128 . . Cca02g02277 Cca08g00625 . . Dod02g3068 Dod06g0757 . . . . Gma16g01600 . . . Gso16g1564 . . . Lal1g0814 . Lal9g0799 . . . . . . . . . . . . Lasa6g04127 . . . . . . . . Lja2g2582 . Mal1g2015 Mal6g2839 . Mepo4g04264 . Mesa1g04677 . . Mtr1g3777 Mtr6g1463 . . . Phco6g02501 . . Psa6g4582 . Pste9g01106 Pste4g01893 . . . Pte9g00325 . Pumo3g00921 Pvu4g1102 Pvu7g0697 . Rops6g02771 . Seca10g04126 . Spst10g00997 Ssu7g0764 . Sto10g2491 . Tpr1g0725 Tpr2g4359 . Trre1g05435 Tsu01g04452 Tsu06g03110 . Vian3g00616 . Vifa3g02957 Vimu8g02279 Vimu3g03080 . Viun7g03293 . . Vra8g2254 Vra1g1896
Vvi16g0864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0865 . . . . Adu05g03341 . . Aed7g0563 Aev05g2942 . Ahy15g3508 . Aip05g03812 . . . . . . Apr6g0723 Arst5g04254 . . . . . . Bva04g01132 . . . Cca08g00629 . . Dod02g3064 . . . . . Gma16g01598 . . . Gso16g1558 . . . . . Lal9g0801 . . . . . . . . . Lapu4g00569 . . . . . . . . . . . Lja2g2587 . . . . . . . . . . . . . . . . . . . Pste9g01196 . . . . . Pumo6g02608 . Pvu4g1252 . . . . . Spst4g03170 . . . . . . . . . . . Vian8g01096 . . . Vimu8g02026 . Viun4g02226 . . . . Vra1g1883
Vvi16g0866 . . . . Adu05g03342 . . Aed11g1701 Aev05g2941 . Ahy15g3509 . Aip05g03813 . . . . . . . Arst5g04257 . Bach1g01193 . . . Bva03g01426 . . . . Cca06g01783 . . Dod02g3063 . . . . . Gma16g01597 . . . Gso16g1557 . . . Lal1g0818 . . . . . . . . . . . Lapu4g00570 . . . . . . . . . . . Lja2g2588 . . . Mepo5g02260 . Mesa22g02201 . . . . . . . . . . . . . Pste9g01195 . . . . . Pumo6g02607 . Pvu4g1251 . Rops5g00854 . . . Spst4g03171 . . Ssu2g2843 . . . . Trre11g01360 . . . Vian8g01095 . Vifa1g04287 . Vimu8g02027 . Viun4g02225 . Vivi2g05466 . . Vra11g0297
Vvi16g0867 . . . . . Adu09g02382 . . . Aev09g2242 . Ahy19g3544 . Aip09g04004 . . . Amo19g4451 . . . Arst9g03140 . . . . . . . . . . . . . Dod06g0762 . . . . Gma10g02244 . . . Gso10g2113 . . . . . . . Lal12g0043 . . . . . . . . Lapu7g02057 . Lasa6g04120 . . . . . . . . . Lja5g0615 . . . Mepo4g04259 . Mesa1g04674 . . . . . Phac7g01034 . Phco6g02495 . . . . . Pste4g01897 . . Pte16g00261 . . Pumo3g00924 . Pvu7g0705 . Rops6g02768 . Seca8g07406 . Spst10g00994 . . Sto10g2562 . . . . Trre1g05428 . . . Vian3g00618 . Vifa3g02945 . Vimu3g03078 . Viun7g03290 . Vivi1g04351 . .
Vvi16g0868 . . . . Adu05g03344 . Aed1g2245 Aed7g0566 Aev05g2939 Aev05g0020 Ahy15g3510 Ahy15g1404 Aip05g03815 Aip05g01471 . . . . . Apr6g0721 Arst5g04263 . Bach1g01192 . . . Bva03g01423 Bva04g01134 . . Cca02g02275 Cca08g00636 . . Dod02g3062 . . . . . Gma16g01595 . . . Gso16g1556 . . . Lal1g0819 . Lal9g0803 . . Lal13g0033 . . . . . . Lapu4g00574 . . . . . . . . . . . Lja2g2591 . Mal1g2017 . . . . . . . Mtr1g3775 Mtr6g1359 . . Phco5g00671 . . . Psa6g4566 . Pste9g01192 . Pte16g00260 Pte9g00327 . . Pumo6g02606 . Pvu4g1247 . Rops5g00856 . . . Spst4g03174 . Ssu7g0766 . . . Tpr1g0727 . . . Tsu01g04449 . Vian8g01091 . Vifa1g04293 . Vimu8g02036 . Viun4g02221 . Vivi2g05463 . Vra8g2253 Vra1g1874
   
Previous Page 2296 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Aed Aed11g1701 Chr11 20683297 20686655 -
Cca Cca06g01783 Chr06 33141498 33151735 -
Ssu Ssu2g2843 Chr2 89464917 89467185 -
Vra Vra11g0297 Chr11 2106369 2116929 +
Sto Sto10g2491 Chr10 35187192 35190608 -
Vvi Vvi16g0859 Chr16 16673986 16675524 -
Vvi Vvi16g0860 Chr16 16682709 16711818 -
Vvi Vvi16g0861 Chr16 16717905 16718516 -
Arst Arst9g00218 Chr9 1797025 1801074 +
Bva Bva04g01127 Chr04 7599384 7600191 -
Gma Gma10g02248 Chr10 50029568 50035036 +
Gso Gso10g2117 Chr10 48158044 48159064 +
Mal Mal1g2014 Chr1 26498705 26499325 -
Mtr Mtr1g3778 Chr1 49330564 49331354 +
Pvu Pvu7g0901 Chr7 8788553 8791957 -
Tpr Tpr1g0724 Chr1 6144390 6145219 -
Tsu Tsu01g04453 Chr01 52204062 52204736 +
Vvi Vvi16g0862 Chr16 16727764 16727859 -
Vvi Vvi16g0863 Chr16 16728137 16729294 -
Adu Adu09g02386 Chr09 111155605 111157104 +
Aed Aed1g2242 Chr1 18674099 18679519 -
Aed Aed7g0557 Chr7 4086999 4089775 -
Aev Aev05g2945 Chr05 30196276 30197585 +
Aev Aev09g2246 Chr09 25064924 25065526 +
Ahy Ahy15g3504 Chr15 157795371 157798754 -
Ahy Ahy19g3541 Chr19 158156747 158159944 -
Aip Aip05g03807 Chr05 146338483 146341844 -
Aip Aip09g04001 Chr09 146434919 146437884 -
Amo Amo19g4455 Chr19 161496682 161500066 +
Apr Apr6g0728 Chr6 11320078 11326919 +
Arst Arst10g03867 Chr10 105463834 105469867 +
Arst Arst9g03143 Chr9 109051127 109054571 +
Bva Bva04g01128 Chr04 7600992 7606409 -
Cca Cca02g02277 Chr02 43284492 43286921 +
Cca Cca08g00625 Chr08 11299411 11307206 -
Dod Dod02g3068 Chr02 64898723 64902273 +
Dod Dod06g0757 Chr06 9238887 9241717 -
Gma Gma16g01600 Chr16 36856962 36862620 +
Gso Gso16g1564 Chr16 36187190 36192826 +
Lal Lal1g0814 Chr1 5599893 5604272 -
Lal Lal9g0799 Chr9 5759972 5764082 -
Lasa Lasa6g04127 Chr6 618887715 618888886 -
Lja Lja2g2582 Chr2 34958250 34964225 -
Mal Mal1g2015 Chr1 26500812 26502261 -
Mal Mal6g2839 Chr6 75221501 75223338 +
Mepo Mepo4g04264 Chr4 52427983 52431245 +
Mesa Mesa1g04677 Chr1 72676080 72677632 +
Mtr Mtr1g3777 Chr1 49326729 49329864 +
Mtr Mtr6g1463 Chr6 24110624 24115329 +
Phco Phco6g02501 Chr6 46431268 46435136 +
Psa Psa6g4582 Chr6 398380777 398383183 -
Pste Pste9g01106 Chr9 8123227 8126124 -
Pste Pste4g01893 Chr4 14105603 14107007 -
Pte Pte9g00325 Chr9 3905415 3909346 -
Pumo Pumo3g00921 Chr3 14304398 14313345 -
Pvu Pvu4g1102 Chr4 32685497 32689022 -
Pvu Pvu7g0697 Chr7 6131615 6135340 -
Rops Rops6g02771 Chr6 49762599 49767047 +
Seca Seca10g04126 Chr10 91662587 91668629 -
Spst Spst10g00997 Chr10 10628998 10630686 +
Ssu Ssu7g0764 Chr7 15429494 15431189 -
Sto Sto10g2491 Chr10 35187192 35190608 -
Tpr Tpr1g0725 Chr1 6146164 6150127 -
Tpr Tpr2g4359 Chr2 47388568 47393402 -
Trre Trre1g05435 Chr1 59931932 59933306 +
Tsu Tsu01g04452 Chr01 52199331 52202556 +
Tsu Tsu06g03110 Chr06 41146448 41149635 -
Vian Vian3g00616 Chr3 6209939 6211479 -
Vifa Vifa3g02957 Chr3 832509388 832510389 -
Vimu Vimu8g02279 Chr8 29577877 29580080 -
Vimu Vimu3g03080 Chr3 44624212 44625101 +
Viun Viun7g03293 Chr7 34996749 35000410 +
Vra Vra8g2254 Chr8 40821869 40825481 +
Vra Vra1g1896 Chr1 36032798 36037592 +
Vvi Vvi16g0864 Chr16 16729903 16731815 -
Vvi Vvi16g0865 Chr16 16732774 16736877 -
Adu Adu05g03341 Chr05 105852898 105857347 -
Aed Aed7g0563 Chr7 4113394 4118588 -
Aev Aev05g2942 Chr05 30173478 30174064 +
Ahy Ahy15g3508 Chr15 157828283 157832794 -
Aip Aip05g03812 Chr05 146369557 146373907 -
Apr Apr6g0723 Chr6 11263998 11268305 +
Arst Arst5g04254 Chr5 104528627 104533155 -
Bva Bva04g01132 Chr04 7615742 7618854 -
Cca Cca08g00629 Chr08 11333452 11339116 -
Dod Dod02g3064 Chr02 64873631 64877160 +
Gma Gma16g01598 Chr16 36815888 36820258 +
Gso Gso16g1558 Chr16 36147320 36151632 +
Lal Lal9g0801 Chr9 5778414 5779013 -
Lapu Lapu4g00569 Chr4 5799389 5804438 -
Lja Lja2g2587 Chr2 34994254 34998961 -
Pste Pste9g01196 Chr9 9724095 9728869 +
Pumo Pumo6g02608 Chr6 61735055 61739343 +
Pvu Pvu4g1252 Chr4 38446440 38451567 +
Spst Spst4g03170 Chr4 71300185 71304660 -
Vian Vian8g01096 Chr8 28865297 28870035 +
Vimu Vimu8g02026 Chr8 26259124 26261046 -
Viun Viun4g02226 Chr4 37985087 37989988 +
Vra Vra1g1883 Chr1 35854041 35859091 +
Vvi Vvi16g0866 Chr16 16737775 16755228 -
Adu Adu05g03342 Chr05 105873919 105878243 -
Aed Aed11g1701 Chr11 20683297 20686655 -
Aev Aev05g2941 Chr05 30167051 30171925 +
Ahy Ahy15g3509 Chr15 157839339 157843603 -
Aip Aip05g03813 Chr05 146380391 146384667 -
Arst Arst5g04257 Chr5 104549670 104553964 -
Bach Bach1g01193 Chr1 25185137 25188212 +
Bva Bva03g01426 Chr03 13599760 13604596 +
Cca Cca06g01783 Chr06 33141498 33151735 -
Dod Dod02g3063 Chr02 64864125 64871443 +
Gma Gma16g01597 Chr16 36808390 36813599 +
Gso Gso16g1557 Chr16 36139653 36145079 +
Lal Lal1g0818 Chr1 5635614 5640915 -
Lapu Lapu4g00570 Chr4 5817304 5822234 -
Lja Lja2g2588 Chr2 35000024 35003330 -
Mepo Mepo5g02260 Chr5 26498677 26501444 +
Mesa Mesa22g02201 Chr22 53682583 53686612 -
Pste Pste9g01195 Chr9 9716077 9721827 +
Pumo Pumo6g02607 Chr6 61727802 61733173 +
Pvu Pvu4g1251 Chr4 38431187 38436411 +
Rops Rops5g00854 Chr5 16399600 16410317 -
Spst Spst4g03171 Chr4 71307688 71312150 -
Ssu Ssu2g2843 Chr2 89464917 89467185 -
Trre Trre11g01360 Chr11 13325702 13327907 -
Vian Vian8g01095 Chr8 28846568 28848495 +
Vifa Vifa1g04287 Chr1 665247981 665249426 -
Vimu Vimu8g02027 Chr8 26273109 26278224 -
Viun Viun4g02225 Chr4 37966676 37972209 +
Vivi Vivi2g05466 Chr2 180036868 180039086 +
Vra Vra11g0297 Chr11 2106369 2116929 +
Vvi Vvi16g0867 Chr16 16785666 16788434 +
Adu Adu09g02382 Chr09 111128178 111131188 +
Aev Aev09g2242 Chr09 25047086 25048267 +
Ahy Ahy19g3544 Chr19 158172225 158175178 -
Aip Aip09g04004 Chr09 146451677 146454565 -
Amo Amo19g4451 Chr19 161481080 161484096 +
Arst Arst9g03140 Chr9 109025273 109028359 +
Dod Dod06g0762 Chr06 9284645 9288481 -
Gma Gma10g02244 Chr10 50001627 50005423 +
Gso Gso10g2113 Chr10 48124709 48128455 +
Lal Lal12g0043 Chr12 301267 303412 -
Lapu Lapu7g02057 Chr7 36795744 36800174 +
Lasa Lasa6g04120 Chr6 618553523 618554734 +
Lja Lja5g0615 Chr5 5519371 5522811 -
Mepo Mepo4g04259 Chr4 52388834 52390280 +
Mesa Mesa1g04674 Chr1 72631919 72632461 +
Phac Phac7g01034 Chr7 6541952 6546287 -
Phco Phco6g02495 Chr6 46367163 46368976 +
Pste Pste4g01897 Chr4 14158427 14161073 -
Pte Pte16g00261 Chr16 3565206 3568473 -
Pumo Pumo3g00924 Chr3 14334993 14336252 -
Pvu Pvu7g0705 Chr7 6217874 6222019 -
Rops Rops6g02768 Chr6 49695263 49696948 +
Seca Seca8g07406 Chr8 170994852 170998660 +
Spst Spst10g00994 Chr10 10598932 10600233 +
Sto Sto10g2562 Chr10 35926498 35927953 -
Trre Trre1g05428 Chr1 59878308 59879822 +
Vian Vian3g00618 Chr3 6239686 6242656 -
Vifa Vifa3g02945 Chr3 827881578 827882805 +
Vimu Vimu3g03078 Chr3 44596994 44600427 +
Viun Viun7g03290 Chr7 34973948 34978127 +
Vivi Vivi1g04351 Chr1 92838292 92840597 -
Vvi Vvi16g0868 Chr16 16790841 16793381 +
Adu Adu05g03344 Chr05 105888843 105891144 -
Aed Aed1g2245 Chr1 18687695 18690587 -
Aed Aed7g0566 Chr7 4131622 4135277 -
Aev Aev05g2939 Chr05 30153585 30156095 +
Aev Aev05g0020 Chr05 153612 154079 -
Ahy Ahy15g3510 Chr15 157854171 157856488 -
Ahy Ahy15g1404 Chr15 24601593 24602360 +
Aip Aip05g03815 Chr05 146394283 146396600 -
Aip Aip05g01471 Chr05 23644710 23645177 +
Apr Apr6g0721 Chr6 11212946 11216558 +
Arst Arst5g04263 Chr5 104564746 104566881 -
Bach Bach1g01192 Chr1 25174293 25176535 +
Bva Bva03g01423 Chr03 13586743 13589151 +
Bva Bva04g01134 Chr04 7628409 7630922 -
Cca Cca02g02275 Chr02 43267725 43269932 +
Cca Cca08g00636 Chr08 11530645 11536359 -
Dod Dod02g3062 Chr02 64852166 64858607 +
Gma Gma16g01595 Chr16 36771209 36774907 +
Gso Gso16g1556 Chr16 36116503 36120174 +
Lal Lal1g0819 Chr1 5644768 5647087 -
Lal Lal9g0803 Chr9 5792318 5795085 -
Lal Lal13g0033 Chr13 233851 236255 -
Lapu Lapu4g00574 Chr4 5863822 5867380 -
Lja Lja2g2591 Chr2 35092636 35096279 -
Mal Mal1g2017 Chr1 26518276 26519769 -
Mtr Mtr1g3775 Chr1 49305318 49307984 +
Mtr Mtr6g1359 Chr6 21019824 21025016 +
Phco Phco5g00671 Chr5 6853430 6859123 -
Psa Psa6g4566 Chr6 397271996 397274845 +
Pste Pste9g01192 Chr9 9676271 9679905 +
Pte Pte16g00260 Chr16 3556522 3559037 -
Pte Pte9g00327 Chr9 3918104 3922290 +
Pumo Pumo6g02606 Chr6 61648646 61651543 +
Pvu Pvu4g1247 Chr4 38366204 38370568 +
Rops Rops5g00856 Chr5 16473398 16476393 -
Spst Spst4g03174 Chr4 71349401 71352899 -
Ssu Ssu7g0766 Chr7 15463414 15465792 -
Tpr Tpr1g0727 Chr1 6162431 6164778 -
Tsu Tsu01g04449 Chr01 52183098 52185345 +
Vian Vian8g01091 Chr8 28764340 28767959 +
Vifa Vifa1g04293 Chr1 666102566 666104696 -
Vimu Vimu8g02036 Chr8 26369646 26372959 -
Viun Viun4g02221 Chr4 37929022 37933217 +
Vivi Vivi2g05463 Chr2 180003090 180010125 +
Vra Vra8g2253 Chr8 40807434 40809691 +
Vra Vra1g1874 Chr1 35739192 35743257 +
Mtr Mtr6g1359 Chr6 21019824 21025016 +