Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02279 ATGATAACACCCACAACAACCTCAATGAAGAATCCAGTCTGCAGCAACCTCACCTCCCATGTTCTAGGCCTCCACCTTCCCGCCGAGGTTCATCTTGTAAATGATTATGCAGTCCTTAAATATATGAGCGGAGGGATCCACAAGTCGTTGATGGAGTTGCCACAATTACAGTATTTGAACCTTTATTTCAATACTTTTCCAGACACTAATATTCCAGAGTTTCTTGGTTCTCTCAGAAACTTGAAATACCTTGATCTATCTTTTTGTAATTTCGTTGGAGAAATTCCAAGCCAGTTTGGCTCTCTTTCTCATTTGAAATACTTAAAACTTGCTGGTAATAATCTGAACGGTTCAATCCCTCATCAGCTTGGAAATCTCTCCAAATTACAGCATCTTGATCTGAATGGCAATTATTTTGAAGGAAATATACCATCTCAACTAGGAAATCTCTTCCGGTTACAGTATCTTGATCTCAGAGGCAATTATTTTGAAGAAAATATGCCATCTCAACTTGGAAATCTCTCCCAGTTACAAGAGCTCTATCTTTCTAATAATATCAACTTTGCCCATGGAGGTCAGTGGCTCCCAAATCTCCTTTATCTTTACTTTGACTCTGTACCAAATCTTAATCGGTCACCTACTTTGTTGCAAGCGATTGCGAAGCTACCACAACTAAGAGAACTAAGTTTAGTTAGTTGTAGCCTTTCCGATGATTTTATTCTGTCATCCATGTCTTCTAAGTTCAATTCTTCTACTTCCCTCTCAGTCCTTCATCTTCCTTGGAACACCTTCACGTCTTCTTCAATGGTATTCCAATGGGTGTCAAACATCACTTCCAACCTTGTTGAGCTTGACCTTAGTGGTAACCACTTGGAGGGTTTGACATCAAGTGATTTTGGCATCGTCATGAATTCGCTTAGGCATCTTCACCTCTCCTCTAATTATTTCAAGGCAAAGGATTTGAAATATTTCACAAATATATGCACCTTACATTCTTTATACCTATATTTTAACAATTTGACTGAAGACCTTCCTTCCATTCTCAGTAATTTGTCCAGTAGTGGTTGCGTTAGACACTCATTGCAAGAATTAGATCTAAGTGGGAATTACATAACTGGCACTTTTTCTGACATTTCAGTATTCTCCTCTTTGAAATCATTGTTTCTTGATGAAAATTGGTTAAGTGCAACTATACCTGAAGGTGTGAAGTTACCATCTACTTTGGAGGAATTGACAATTAGCTCAAATTCATTCGAAGGTGGAATTCCAAAATCATTTGGAAGCGCATGTGCTTTGCACTCATTCGACATGAGTAATAATAGCTTGACTGTTGAGCTTCCAATGATAATCTCTCATTTGTCTGGATGTGCTAGATATTCATTGCAAGAATTATATCTAGACATGAATCAAATTAATGGAACATTACCGGACTTCTCAACATTCACATCTTTAAAAATATTATATCTTCGCAACAATAAGCTAAATGGAGAGATTCATCAGGACATTCAATTTCCGCCTAAATTGGAGGGTCTCTACATCTCTTCAAATTCTTTAAAAGGTGTGTTGACTGACTACCACTTTGCTAACATGTCTAAGTTACAGAACTTGGATTTATCTGGCAACTCATTGGGCTTGGCATTTACAAAAAAGTGGATTCCACCTTTTCAATTGCTATCGATAAACTTGAGATCTTGCCAGCTTGGTCCAACATTTCCCATGTGGTTGCAGACACAAAATCAGTTTATCCATATTGACATTTCAAATGCTACAATATCAGATATTATTCCTCAATGGTTTTGGACTAAATTATCTCTACAAAAAGTGATGACAATGAATATTTCATGCAACAATCTACGAGGTACAATTCCAAATGTTCCATCAACGTATCTTTCTACATCCATGATCCTTGCATCAAATCAATTTGAAGGTACTATT 1935 0.3711 MITPTTTSMKNPVCSNLTSHVLGLHLPAEVHLVNDYAVLKYMSGGIHKSLMELPQLQYLNLYFNTFPDTNIPEFLGSLRNLKYLDLSFCNFVGEIPSQFGSLSHLKYLKLAGNNLNGSIPHQLGNLSKLQHLDLNGNYFEGNIPSQLGNLFRLQYLDLRGNYFEENMPSQLGNLSQLQELYLSNNINFAHGGQWLPNLLYLYFDSVPNLNRSPTLLQAIAKLPQLRELSLVSCSLSDDFILSSMSSKFNSSTSLSVLHLPWNTFTSSSMVFQWVSNITSNLVELDLSGNHLEGLTSSDFGIVMNSLRHLHLSSNYFKAKDLKYFTNICTLHSLYLYFNNLTEDLPSILSNLSSSGCVRHSLQELDLSGNYITGTFSDISVFSSLKSLFLDENWLSATIPEGVKLPSTLEELTISSNSFEGGIPKSFGSACALHSFDMSNNSLTVELPMIISHLSGCARYSLQELYLDMNQINGTLPDFSTFTSLKILYLRNNKLNGEIHQDIQFPPKLEGLYISSNSLKGVLTDYHFANMSKLQNLDLSGNSLGLAFTKKWIPPFQLLSINLRSCQLGPTFPMWLQTQNQFIHIDISNATISDIIPQWFWTKLSLQKVMTMNISCNNLRGTIPNVPSTYLSTSMILASNQFEGTI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02279 645 SUPERFAMILY L domain-like 279 626 - -
Vimu8g02279 645 Pfam Leucine Rich Repeat 280 299 IPR001611 GO:0005515
Vimu8g02279 645 Pfam Leucine Rich Repeat 408 427 IPR001611 GO:0005515
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 3 143 IPR032675 -
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 552 645 IPR032675 -
Vimu8g02279 645 Pfam Leucine rich repeat 483 543 IPR001611 GO:0005515
Vimu8g02279 645 Pfam Leucine rich repeat 79 138 IPR001611 GO:0005515
Vimu8g02279 645 PRINTS Leucine-rich repeat signature 530 543 - -
Vimu8g02279 645 PRINTS Leucine-rich repeat signature 281 294 - -
Vimu8g02279 645 PANTHER OS01G0750400 PROTEIN 359 522 - -
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 377 454 IPR032675 -
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 144 188 IPR032675 -
Vimu8g02279 645 SUPERFAMILY RNI-like 46 351 - -
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 189 376 IPR032675 -
Vimu8g02279 645 Gene3D Ribonuclease Inhibitor 455 551 IPR032675 -
Vimu8g02279 645 SMART LRR_typ_2 278 301 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 150 174 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 102 126 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 53 78 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 381 405 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 481 504 IPR003591 -
Vimu8g02279 645 SMART LRR_typ_2 303 326 IPR003591 -
Vimu8g02279 645 FunFam Piriformospora indica-insensitive protein 2 95 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02279 Vimu-Chr8 29577877 29580080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02279 16 645 Receptor kinase-like Gene Family AT5G46330 28.875 1.17e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02279 - - var:108345043 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02279 8 29577877 29580080 Vimu8g02279 8 29577877 29580080 ECH