Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g02607 | ATGGAGGAACCGAACTCCGATGGCTGGCTGCCACCAGGTTGGACTGTGGAAGTGAGGGTGAGAAAGAATGGTAAGAGAGACAAGTATTACTTCCCCCCCTCAAGTGGACTAAAATTCAATTCCAAGGTGGAGGTATTTCGTTATCTTGACAATGCTCAGAACAAAGTCAGCATCCAGAAAATCTCTCCTAATGTTATAGTTGAGAAAGCTATTGCGGAAGGGTTACCACCAGGATGGGTGAAAAAGACCAGAATCGCAACAAATGGAGATTCAGTTAGAAGGGATACGTTCTACATTGACCCTGTAAATGGGTATGCATTCTGCTCAATAAAAGATGTTGATCACTATCTTGAATCTGGAGAGATAGGACGGAACGAATTCAAGTCAAAAGACAAAGATGGCAGTGATATGGAGTTAAAAGCTGACAAATCTCCTTCAACAAGTGTAACCATGAAACCAACATCATCAGTTAGCATGGATCAAAGCTCAGATTTGGACATGATAGCTAATGACCGACAGATTCCAAGATCTGCAAGTTCTGAAGAATATATGTCTGTGCCCGTCTCTGAATGTATTTCCAATCAGTGTGTGGTGGGTGCTGAACTGACCAGTTCAGTTCTATCACGGGTTGAAAGTTCAGATCAGAAACAAGGGAAGGTTGGTTTAGCTCAAAGCGCTTCAGTTTCAGGTTGCACTAACGAAGATGCCGAAGAAAAGCAACTTCAAGAAAATTCAGAGACAAAACATGGAACTGAAAAAGCCCAGGCCCAAGATCGCCAGTGCAAAAACAAGCACAAGAAAGAGATCAATTTGCCTCGCCGTGCTTCAAAGCGTCTTGCTGGAATTAAGGTTGATCCTGTTCCGGAACTTAAAACAAGAAATCGAGCACGTCGTGTTGCAGTTAAACAATCAGGTGAGGAAGAAACCATCACAGATGTGGATAAATCTCCCAACAGCTTGACTGATGGTCTCACAAAACCAAAATTAAGTGACAATGATACTGAGAAGACTCTAGAAGTGCAAAGAAATGACAAGAATAAAGAATGCTTCTCTTTTTCGCCTCTGGAGAACAATGCTACTGTGGAAGAGTGTGTGAGAGTCCTTGATAATGGAGATAAAGTTGATGCAAAGTTAGATTACACCCTTGACTTTCCCCTCAGAGAACTACTAACAGACCCATGTATTGCATTTGCAATTCAAACTCTCACTGGAGTAACGTTTGAAACCTCTAAAAACTCACAAACTTCTTCCCAGTTAAAAAATAGCCAGCATTCCAAAACTTCTGCCACGGCCGCCGGTGGTGGTGAAGGACATGGTAAGAAAAGCAATGATGGGTTAGATGACAATGTGTTATCATCTCCGGGGAATCTTGCTAATCGACAGGAACATGTTGGAGATGCCAAAACTGATTTAAAGGCCAAGAATGAGAATGCAGGACCATCTTCTGAAAAGACACCTGACATGTCATGGATGGATCCATGCATTGAATTCGCAATAAAAACTCTCACTGGCACCATCCCACTAGACTCTGATCAAAATCCCAAGAACTGCCTCCAACAGCAGCTCGGCTCATCAAATAACCAACACAGTGAGATGGCCTTGTCAAGTGTCAGTTTAGATAACATACACCAAACTGACTACTATTGCAGCCAATACTTTGGCACACAGAAACAAATGTTTAAACAGTCTTTTGTGGATCCATCACTGCAGCACACCAGAAATATTGGTATTGGAAATTCTGCTGGAGCCAGACTCTCTCACTGTGGTGAAGATACTAGAAGGAATGTTTGCTAG | 1794 | 0.4242 | MEEPNSDGWLPPGWTVEVRVRKNGKRDKYYFPPSSGLKFNSKVEVFRYLDNAQNKVSIQKISPNVIVEKAIAEGLPPGWVKKTRIATNGDSVRRDTFYIDPVNGYAFCSIKDVDHYLESGEIGRNEFKSKDKDGSDMELKADKSPSTSVTMKPTSSVSMDQSSDLDMIANDRQIPRSASSEEYMSVPVSECISNQCVVGAELTSSVLSRVESSDQKQGKVGLAQSASVSGCTNEDAEEKQLQENSETKHGTEKAQAQDRQCKNKHKKEINLPRRASKRLAGIKVDPVPELKTRNRARRVAVKQSGEEETITDVDKSPNSLTDGLTKPKLSDNDTEKTLEVQRNDKNKECFSFSPLENNATVEECVRVLDNGDKVDAKLDYTLDFPLRELLTDPCIAFAIQTLTGVTFETSKNSQTSSQLKNSQHSKTSATAAGGGEGHGKKSNDGLDDNVLSSPGNLANRQEHVGDAKTDLKAKNENAGPSSEKTPDMSWMDPCIEFAIKTLTGTIPLDSDQNPKNCLQQQLGSSNNQHSEMALSSVSLDNIHQTDYYCSQYFGTQKQMFKQSFVDPSLQHTRNIGIGNSAGARLSHCGEDTRRNVC | 597 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 126 | 140 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 411 | 489 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 411 | 430 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
| Pumo6g02607 | 597 | SUPERFAMILY | DNA-binding domain | 72 | 126 | IPR016177 | GO:0003677 | |
| Pumo6g02607 | 597 | Gene3D | - | 69 | 164 | - | - | |
| Pumo6g02607 | 597 | Gene3D | - | 1 | 68 | - | - | |
| Pumo6g02607 | 597 | ProSiteProfiles | Methyl-CpG-binding domain (MBD) profile. | 1 | 70 | IPR001739 | GO:0003677 | |
| Pumo6g02607 | 597 | PANTHER | OS04G0193200 PROTEIN | 1 | 563 | IPR038945 | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 295 | 313 | - | - | |
| Pumo6g02607 | 597 | SUPERFAMILY | DNA-binding domain | 7 | 54 | IPR016177 | GO:0003677 | |
| Pumo6g02607 | 597 | SMART | TAM_2 | 3 | 73 | IPR001739 | GO:0003677 | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 212 | 273 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 236 | 265 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 141 | 166 | - | - | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 295 | 336 | - | - | |
| Pumo6g02607 | 597 | Pfam | Methyl-CpG binding domain | 75 | 121 | IPR001739 | GO:0003677 | |
| Pumo6g02607 | 597 | Pfam | Methyl-CpG binding domain | 4 | 57 | IPR001739 | GO:0003677 | |
| Pumo6g02607 | 597 | MobiDBLite | consensus disorder prediction | 126 | 166 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g02607 | Pumo-Chr6 | 61727802 | 61733173 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g02607 | - | - | gsj:114388973 | 1014.99 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo6g02607 | 6 | 61727802 | 61733173 | Pumo6g02607 | 6 | 61727802 | 61733173 | ECH |