Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00636 ATGGCACTGCAAATATGGGAGACACTGAAGGAAGCCATAGTCGCCTACACAGGCCTCTCTCCACCCACCTTCTTCACCCTCCTCGCCCTCTTCCTCGCCATCTACTACGTCGTTTCGGGCCTCTTCCCCTCCTCCGACAACCACCGCCACGTGGCTTCGCGCGACTTCGAGCCCCAGATGGAGCCTCTGCGACCACCCGTTCAGATCGGCGAGGTCTCCGAGGAGGAGCTCCGAGCCTACGACGGCTCCGATCCCGAGAAGCCCCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTGTCGCAGAGCAGAATGTTTTATGGACCTGGTGGACCCTATGCTCTATTTGCTGGCAAGGATGCTAGCAGAGCTTTAGCAAAGATGTCTTTTGAAGAGAAAGATCTAACTGGAGATATTTCTGGCCTTGGTCCATTTGAGCTTGAGGCCCTGCAAGACTGGGAATACAAGTTTATGGGCAAGTATGTAAAAGTTGGAACTGTCAAAGCGACAGTTCCAGTGACCAAACCAGAATCCACTGGTGAAGCATCAGAATCTACACCCCATGATGCTGAATCTTCCAAGCCTACTGAAGATGTTCCATCAGAATCAGCAGCCGTTAAATATGATGAAACTCCTTCAAAGGTTGATGCAGATAAAGAGGAATAA 666 0.518 MALQIWETLKEAIVAYTGLSPPTFFTLLALFLAIYYVVSGLFPSSDNHRHVASRDFEPQMEPLRPPVQIGEVSEEELRAYDGSDPEKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMGKYVKVGTVKATVPVTKPESTGEASESTPHDAESSKPTEDVPSESAAVKYDETPSKVDADKEE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00636 221 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 1 215 - -
Cca08g00636 221 MobiDBLite consensus disorder prediction 172 221 - -
Cca08g00636 221 PANTHER CYTOCHROME B5-LIKE HEME/STEROID-BINDING DOMAIN PROTEIN 1 215 - -
Cca08g00636 221 MobiDBLite consensus disorder prediction 182 196 - -
Cca08g00636 221 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 65 167 IPR036400 -
Cca08g00636 221 Pfam Cytochrome b5-like Heme/Steroid binding domain 73 167 IPR001199 -
Cca08g00636 221 Gene3D - 70 168 IPR036400 -
Cca08g00636 221 SMART Cyt_b5_2 72 168 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00636 Cca-Chr8 11530645 11536359 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00636 K17278 - gmx:100807452 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00636 08 11530645 11536359 Cca08g00636 08 11530645 11536359 ECH
Cca08g00636 08 11530645 11536359 Cca02g02275 02 43267725 43269932 PCT