Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1251 ATGGAGAAGCTGAACTCCGATGACCAACTTCCACCAGGTTGGACTGTTGAAGTGAAGGTGAGAAAGAATGGTAAGAGAGACAAGTATTACTTTCTCCCCTCTAGTGGACTAAAATTCAATTCCAAGGTGGAGGTATATCGCTATCTTGACAATGCTAATAACAAAGTCAGCATCCAGAAAATCTCTCCTAATGTTGTAGTTGAGAAAGCTATTGCAGAAGGGTTACCACCAGGATGGGTGAAAAAGACTAGAATTGCAACTAAAGGAGATACAGTTAGAAGAGACACGTACTACATCGACCCTGTAAGTGGGTATGCATTCCACTCAATTGAAGATGTTGATCACTATCTTGAATCTGGAGAGGTAGGAAGGAACACACTCAAGCCAAAAGATGAAGACATCAGTGATACGAAGTTAAAAGATGACAAATCTCCTTCAGCATGTGTAACCATGAAACCAACATCATCAATTAGCATGGGTCAGAGCTCAGATTTGGATATGGTAGCAAATTACCAACAGATTCCGAGATCTGCGAGTTCTGGAGAATATATGCATGTGCCTGTGCCTGACTCTAAGTTTATTTTCAATCATGGTGTGGTGGGAACTGAATTGAGCAGTTCAGTTCTATCACGGGATGAAAATTCTGATCAGAAGCAAGTGAAGGTTGGTTTTGCTGAAAGTGCTTCGGTTTCAGGTTGCACTATCAAACATACCCAAGAAAAGCAACTTCAAGAAAGTTCAGAGACAAAGCAAGGAACTGAAAAAGTGCAGGCCCAACACCATCAGTGCAAAAACAAGCACAAGAAAGAGATCAATTTGCCTCGCCGTTGTTCAAAGCGTCTTGCTGGAATTAAGCTTGATCCTGTTCCAGAACTTAAAACAAGAAATCGAACACGTCGAGTAGCAGTTAAAAAATCAGCTGAGGTTGATAAATCTTCCGACAGCTTGCATGATGGTCTAGCTAAACAGAAACTAAGTGGCAACTATAAAGAAGGCTTCACTTTTTCACATGTCCAGAACAATGCTCCGGTTGAAGAGTGTATGAGAGTCACTGAAACTGGAGATAATGTTGTTGCAAAGTTAGATTACAACCTTGACTTCCCCCTCAGAGAATTACTAACAGACCCATGTATTGCATTTGCAATTCAAACTCTCACTGGCCTAACATTTGAGACCTCCAAAAACTCGCAAACTTCTTCTGAGTTAAAAGACATCCAGCATTCTGAAACCTCTGCTACTGCAGGTTGTGAAGGGAAAGGTAAGAAAAGCAATGATGGGTTAAGTGACAATGTGTTCTCATCTCCAGGAAGCCTTGCTACTTCTCAAGAACATGCCAGTGATGCTGCCAAATCCGATATGAAAACCAAGAATGAGAATGCATCACCATCTTCTGAAAAAACACTTGACATGTCATGGATGGATCCATGCATTGAATTTGCTATAAAAACTCTCACCGACTCCATCCCGTTAGACTCTGATCAAAACCCCAAGAACTGCCTTCAACAGCAGCTCAGTTCATCCAGTAACCAACACAGTGAGATGACCATGTCAAATGTCAGTTTAAATAACACTTACCAAACTGACTACTATTGCAGCCAATACTTTGGCTCACAAAAGCCAATGTTTAAACAGTCTTTTGTGGATCCATCATTGAAGCACACCAGAAATATTGGTATTGGAAATTCTGCTGGAGCCAGACTATCCCATTGTGGTGAAGATACTAGAAGGAATGTTTGTTAG 1740 0.4109 MEKLNSDDQLPPGWTVEVKVRKNGKRDKYYFLPSSGLKFNSKVEVYRYLDNANNKVSIQKISPNVVVEKAIAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYAFHSIEDVDHYLESGEVGRNTLKPKDEDISDTKLKDDKSPSACVTMKPTSSISMGQSSDLDMVANYQQIPRSASSGEYMHVPVPDSKFIFNHGVVGTELSSSVLSRDENSDQKQVKVGFAESASVSGCTIKHTQEKQLQESSETKQGTEKVQAQHHQCKNKHKKEINLPRRCSKRLAGIKLDPVPELKTRNRTRRVAVKKSAEVDKSSDSLHDGLAKQKLSGNYKEGFTFSHVQNNAPVEECMRVTETGDNVVAKLDYNLDFPLRELLTDPCIAFAIQTLTGLTFETSKNSQTSSELKDIQHSETSATAGCEGKGKKSNDGLSDNVFSSPGSLATSQEHASDAAKSDMKTKNENASPSSEKTLDMSWMDPCIEFAIKTLTDSIPLDSDQNPKNCLQQQLSSSSNQHSEMTMSNVSLNNTYQTDYYCSQYFGSQKPMFKQSFVDPSLKHTRNIGIGNSAGARLSHCGEDTRRNVC* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1251 579 MobiDBLite consensus disorder prediction 238 267 - -
Pvu4g1251 579 SUPERFAMILY DNA-binding domain 72 122 IPR016177 GO:0003677
Pvu4g1251 579 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13 1 572 - -
Pvu4g1251 579 Gene3D - 61 162 - -
Pvu4g1251 579 MobiDBLite consensus disorder prediction 393 413 - -
Pvu4g1251 579 PANTHER OS04G0193200 PROTEIN 1 572 IPR038945 -
Pvu4g1251 579 MobiDBLite consensus disorder prediction 124 145 - -
Pvu4g1251 579 MobiDBLite consensus disorder prediction 393 468 - -
Pvu4g1251 579 Gene3D - 1 60 - -
Pvu4g1251 579 SUPERFAMILY DNA-binding domain 8 54 IPR016177 GO:0003677
Pvu4g1251 579 SMART TAM_2 3 73 IPR001739 GO:0003677
Pvu4g1251 579 Pfam Methyl-CpG binding domain 7 57 IPR001739 GO:0003677
Pvu4g1251 579 Pfam Methyl-CpG binding domain 75 121 IPR001739 GO:0003677
Pvu4g1251 579 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 70 IPR001739 GO:0003677
Pvu4g1251 579 MobiDBLite consensus disorder prediction 124 161 - -
Pvu4g1251 579 MobiDBLite consensus disorder prediction 426 446 - -
Pvu4g1251 579 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1251 Pvu-Chr4 38431187 38436411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1251 - - var:108343785 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1251 4 38431187 38436411 Pvu4g1251 4 38431187 38436411 ECH