Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00570 ATGCGAGGAGGAATGGAGACGCCGCCGAAATCCAATAGCTGGCTTCCACCAGGTTGGACGGTGGAGGTGAAGATGAGAAAGAATGGTAGGAGAGACAAGTATTACACTCTTCCATCAACTGGAGTAAAGTTCAAATCCAAGGTGGAGGTATTTCGCCATCTTGACAATGCTCGGAACAAAGTCAGCATACAGAAAATCTCTCCTAATGTTGTAGTTGAGAAAGCTATTGCAGAAGGGTTACCACCAGGATGGGTGAAAAAGACCAGAATTGCAACGAAAGGAGATACAGTTAGAAGAGACACGTACTACATTGACCCTGTAAGTGGGTATACATTCCACTCAATTGAAGATGTTGTTCACTATCTTGAATCTGGAGAGATGGGAAGGATCACACTCAAGCCAAAAGATGAAGACAACGGTGATACGAAGTTAAAAGATGACAAATCTCCTTCAGCAAGTGTAACCATGAAACCAACATTATCAATTAGCATGGGTCAGGGCTCAGATTTGGACATGGTATCAAATGACCAACAGATTCCAAGATCTGCGAGTTCTGGAGAATATATGCATGTGCCCTTCTCTAATTTTATGTCCAAGCACGGTGTGGTGGGAACTGAATTGACCCGTTCAGTTCTATCACGAGATGAAAATTCAAATCAGAAGGAAGTGAAGGTTGGTTTTGCTAAAACTGCTTTGGCTTCAGGTTGCACTAACAAAGATACCCAAGAGATGCAACTTCAAAAAAATTCAGAGACAAAGCAAGGAACTAAAAAAGTGCAGGCCCAAAATCATAAGTGCAAAAACAAGCACAAGAAAGAGATCAATTTGCCACGGCGTTCTTCAAAGCGTCTTGCTGGAATTAAGGTTGATCCTGTTCCAGAACTTAAAACAAGAAATCGAACACGTCGACTAGCGGTTAAACAATCAGATGAGAAAGAAATAATCACAAATGTGGATAAATCTCCCAAGAGCTTGCTCGATGGTCTAGCAAAACAGCAACTAAGTGGCAAGGATAAAGAATGCTTCACTTTTTCGCCTCTGGAGAACAATGCTACTATTGAAGAGTGTACGAGAGTCACCGAAAATGGAGATAAAGTTGATGCAAAGTTAGATTACAGCCATGACTTTCCCCTCAGAGAACTATTAACAGACCCGTGTATTGCATTTGCAATTCAAACTCTCACTGGATTAACATTTGAAACCTCAAAAAACCCGCAAACTTCTTCTGAGTTTAAAGACATCCAGCATTCTGAAACCTGTGTGGCTGCCGGTTGTGAAGGGCAAGGTAAGAAAAGCAATGATGGGTTAGGTGACAATGTGTTCTCATCTCCAGGGAGCCTTGCTATTCCTCAAGAACATGCTGGTAATGCTGTCAAAACTGATATGAAGGCCAAGAAAGAGAATGCATCACCATCTTCTGAAAAAACACTTGACATGTCATGGATGGATCCGTGCATTGAATTTGCTATAAAAACTCTCACGGACTCCATCCCGTTAGACACTGATCAAAACCCCAAGAACTGCCTTCAACAGCAGCTCAGTTCATCCAGTAACCAACACAGTGAGATGGCCATGTCAAATGTCAGTTTAAGTAACATGTACCAAACTGACTACTCTTGCAGCCAATACTTTGGCACACAGAAGCCAATGTTTAAACAGTCTTTTGTGGATCCATCATTGAAGCACACCAGAAATATTGGTATTGGAAATTCTGCTGGAGCCAGGCTCTCTCACTGTGGTGAAGGTAATAGAAGGAATGTTTGTTAG 1767 0.4194 MRGGMETPPKSNSWLPPGWTVEVKMRKNGRRDKYYTLPSTGVKFKSKVEVFRHLDNARNKVSIQKISPNVVVEKAIAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYTFHSIEDVVHYLESGEMGRITLKPKDEDNGDTKLKDDKSPSASVTMKPTLSISMGQGSDLDMVSNDQQIPRSASSGEYMHVPFSNFMSKHGVVGTELTRSVLSRDENSNQKEVKVGFAKTALASGCTNKDTQEMQLQKNSETKQGTKKVQAQNHKCKNKHKKEINLPRRSSKRLAGIKVDPVPELKTRNRTRRLAVKQSDEKEIITNVDKSPKSLLDGLAKQQLSGKDKECFTFSPLENNATIEECTRVTENGDKVDAKLDYSHDFPLRELLTDPCIAFAIQTLTGLTFETSKNPQTSSEFKDIQHSETCVAAGCEGQGKKSNDGLGDNVFSSPGSLAIPQEHAGNAVKTDMKAKKENASPSSEKTLDMSWMDPCIEFAIKTLTDSIPLDTDQNPKNCLQQQLSSSSNQHSEMAMSNVSLSNMYQTDYSCSQYFGTQKPMFKQSFVDPSLKHTRNIGIGNSAGARLSHCGEGNRRNVC* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00570 588 SUPERFAMILY DNA-binding domain 77 125 IPR016177 GO:0003677
Lapu4g00570 588 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 5 75 IPR001739 GO:0003677
Lapu4g00570 588 Gene3D - 9 61 - -
Lapu4g00570 588 PANTHER OS04G0193200 PROTEIN 8 554 IPR038945 -
Lapu4g00570 588 MobiDBLite consensus disorder prediction 248 268 - -
Lapu4g00570 588 Pfam Methyl-CpG binding domain 7 62 IPR001739 GO:0003677
Lapu4g00570 588 Pfam Methyl-CpG binding domain 79 126 IPR001739 GO:0003677
Lapu4g00570 588 MobiDBLite consensus disorder prediction 131 155 - -
Lapu4g00570 588 MobiDBLite consensus disorder prediction 131 150 - -
Lapu4g00570 588 Gene3D - 62 161 - -
Lapu4g00570 588 SUPERFAMILY DNA-binding domain 5 59 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00570 Lapu-Chr4 5817304 5822234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00570 - - var:108343785 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00570 4 5817304 5822234 Lapu4g00570 4 5817304 5822234 ECH