Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03171 ATGGAGGAGCCAAACTCCCATGACCTTCCACCAGGTTGGAATGTGGAAGTGAAGGTCAGAAAGAATGGTAAGAGGGACAAGTATTACTTTCTCCCCTCAAGTGGACTAAAATTCAAATCAAAGGTGGAGCTATTTCGCTATCTTGATAATGCTCAGAACAAAGTCAGCATCCAGAAAATATCTCCTAATGTTGTAGTTGAGAAAGCTATTGCGGAAGGGTTACCACCGGGATGGGTGAAAACGACCAGAATTGTAACAAGAGGTGATACAGTTAGAAAAGACACGTACTACATTGACCCTGTAAGTGGGTATACATTCCGCTCAATTGAAGATGTTGATCGCTATCTTGGATCTGGAGGGATGGGAAGGAACACACTCAAGCTAAAAGATAAAGACAGCAGTGATACGATGCAAAAAGATGCCAAATCTCCTTCAGCAAGTGTAACCATGAAACCAACATTGTCAATTAGCATGGATCAGAGCTCAGATTTGGACATGGTAGAAAAAGACCAACAGATTTCAAGATCTGCATGTTCTGAAGTATACATGCATGTGCCCGTCTCAAAATGTTTCACTAACAAAGATAACCAAGAGAAGAAACTTCAAGAAAATTCAGAGACAAAGCAAGGAACTGAAAACTTGCAGGTCCAAGATCACCAGTACAAAAACAAGCACAAGAAAGAGATCAATTTGCCTCGACGATCTTCAAAGCGTCTTGCTGGAATTAAAGTTGATCCTGTTCCTGAACTTCAAACAAGAAGTCGAACACGTCGACTGACACTTAAACAATCAGGTGAAGAAGAAGAGTCCATCACAAATGTGGATAGAACTCCCAATAGCTTGCCTGATGGTCTAGAAAAACAGAAATTAAGTGGCAAGGATAAAGAATGGTTCACTTTTTCACCTCTGGAGAACAATGCTACTGTTGAAGAGTGTGTGAGAGTCACTGACAATGGAGACAAAGTTGATGCAAAGTTAGATTACAACCTTGACTTTCCCCTCAGAGAACTACTGACAGACCCATGTATTGCATTTGCAGTTCAAACTCTCACTGGAGTAACATTTGACATCCCCAAAAGCTCACAAACCTCTTCTGAGTTAAAAAACTTCCAGCATTCAGAGGTCAGGGGAGGGAATGGTAAGAAAAGCAATGTTGGTTTAGGTGACAATGTGTTCTCATCTCCCGAGAACCTTGCTATTCCTCAACAATATGCAGGTGATGCCACCAAAACCAATGTGAAGGCCAAAAATGAGGATGCAGAACCATCTGAAAAGTCACTTGACATGTCATGGATGGATCCATGCATTGAATTTGCTATAAAAACTCTCACCGACTCTATCCCATTAGACTCTGATCAAAACCCCAAGAACTGTCTTCAACAGCAGCTCAGCTCATCCAGTAACCAGCAGCAGAGTGAGATGACTATGTCAAGTGTCAGTTTAGATAACATGTACCAAGCTGACTTCTACTGCAACCAATACTTCGGCACACAAAAACCAATGTTTAACCAGTCTTTTGTGGATCCATCATTGAAGCACACCAGAAACGATGTTGGTACTGCTGGAGCCAGACTCCCTCACCGTGGTGAAAATACTAGAAGGAATATTTGTTAG 1614 0.417 MEEPNSHDLPPGWNVEVKVRKNGKRDKYYFLPSSGLKFKSKVELFRYLDNAQNKVSIQKISPNVVVEKAIAEGLPPGWVKTTRIVTRGDTVRKDTYYIDPVSGYTFRSIEDVDRYLGSGGMGRNTLKLKDKDSSDTMQKDAKSPSASVTMKPTLSISMDQSSDLDMVEKDQQISRSACSEVYMHVPVSKCFTNKDNQEKKLQENSETKQGTENLQVQDHQYKNKHKKEINLPRRSSKRLAGIKVDPVPELQTRSRTRRLTLKQSGEEEESITNVDRTPNSLPDGLEKQKLSGKDKEWFTFSPLENNATVEECVRVTDNGDKVDAKLDYNLDFPLRELLTDPCIAFAVQTLTGVTFDIPKSSQTSSELKNFQHSEVRGGNGKKSNVGLGDNVFSSPENLAIPQQYAGDATKTNVKAKNEDAEPSEKSLDMSWMDPCIEFAIKTLTDSIPLDSDQNPKNCLQQQLSSSSNQQQSEMTMSSVSLDNMYQADFYCNQYFGTQKPMFNQSFVDPSLKHTRNDVGTAGARLPHRGENTRRNIC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03171 537 Gene3D - 5 58 - -
Spst4g03171 537 MobiDBLite consensus disorder prediction 517 537 - -
Spst4g03171 537 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 69 IPR001739 GO:0003677
Spst4g03171 537 MobiDBLite consensus disorder prediction 139 154 - -
Spst4g03171 537 SMART TAM_2 2 72 IPR001739 GO:0003677
Spst4g03171 537 MobiDBLite consensus disorder prediction 198 287 - -
Spst4g03171 537 SUPERFAMILY DNA-binding domain 7 53 IPR016177 GO:0003677
Spst4g03171 537 MobiDBLite consensus disorder prediction 451 476 - -
Spst4g03171 537 PANTHER OS04G0193200 PROTEIN 8 505 IPR038945 -
Spst4g03171 537 Pfam Methyl-CpG binding domain 8 56 IPR001739 GO:0003677
Spst4g03171 537 Pfam Methyl-CpG binding domain 74 120 IPR001739 GO:0003677
Spst4g03171 537 Gene3D - 59 158 - -
Spst4g03171 537 MobiDBLite consensus disorder prediction 250 273 - -
Spst4g03171 537 MobiDBLite consensus disorder prediction 123 154 - -
Spst4g03171 537 SUPERFAMILY DNA-binding domain 72 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03171 Spst-Chr4 71307688 71312150 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03171 - - var:108343785 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03171 4 71307688 71312150 Spst4g03171 4 71307688 71312150 ECH