Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1102 ATGCAGAGTAGGTTCAAATCATGTGTTGCGGCTGTTTGCTTTTTGTCTGGAGCTCATAAGATGCATTTGAAGGTGCTGTTATCAGATGGAATAACCACCACCAAACCAACTAATAAATGGAAGTTGTATGATGGGTGGATACTTTGGTTTTCTTTGATGAGTGAAGAAGGGGGACTAAAACCTGGCCAGGAACCTATCCCTAAGGGGATGTTGCGGTGCTATTTTTGTGTGATGCAGCCTTTTTTGCAGGTTGTTCATGGAGAACACCAAATAAGATGCCTTCCAAAGGAGAGGGAAGCACTCCTCCGATTCAAGGCTGCCATTGTCGATCCCTACGGCATGCTCTCCTCTTGGTCCACTCCCAACTGTTGTCAGTGGGAGGGGATTCGCTGCAGCAACCTCACTGCCCATATTCTAGGCCTCCACCTTCCTGGACAGTATTATTTCGAATATCATGATGAAGAAATCTCTGAACGTTATATCAGCGGAGAGATCCACGAGTCATTGATGGAGTTGCGACAATTAGAGTATTTGAACCTCAGTTCTAATTCTTTTGAAGGCAGTCACATCCCAGAGTTTCTTGCTTCTCTCACAAAGTTGAAATACCTTGATCTCTCTTCATTTTGGTCTCTTTCTCATTTGAAATACTTAAATCTCGCTTATAATTCTCTGGAGGGTTCAATCCCTCGTGAACTTGGGAATCTCTCTCAGTTGCAGTATCTTGATATTGGAAGTAATTCTTTGGAAGGAGATGTACCATCTCAGCTTAGTAATATCTCTCAGAGCTCTAATCTTGGAGGATGTAATGATATTAGAAGATGTTATGGTACTCTAAAAATTAACGAAGGAGGTCAGTGGCTCTCAAATGTCATTTCTTTAACTCATCTTTCCTTACAGGACATATCTAGTTTTAACACTTCACCTAGCTACTTTCGAATGATTGCCAAGCTACCAAAACTAAGAGAACTGAGTGTAATTCATTGTGGCCTTTCCAATCATTTTCTCAATTCATTCCAGCCTTCCAACTTCAATTTTTCTACTTCCCTTTCTGTCCTTGATCTTTCTTCTAACTCCTTCACACAATCAATGGCTGGCTCCACATCAAATCATTTTGGCTTGGCCATGAATTCGCTTCAACACCTTGACCTCTCCTATAATGTGTTCAAGGGTGAGGATTTGAAATCATTCATGAATATATGCACCCTACGTTCATTATACATGCATAAAAACAATATGACCGAAGACCTTCTGTCAATTCTTCGTAATTTTTCTAATGGTTGTGTTAGATACTCACTTCAAGAGTTACAGTTGTCAAACAATCAAATCACGGGATCCGTATCTGACCTTTCAATATTCAAATCTTTAAAATCATTGGATCTTTCCGGCAATCAATTGGAACATTTGTCAACTGGATCTAAATCTTTAGAAGACAGTGTTCCAATATGTTGTAGATATTCATTGCGAGAACTATATCTTGGTCAAAATAAATTCAACGGTGCACTTCCTGATTTCTCAATGTTTTCCAAGTTGGAAATCCTAGATGTATCAGGGAATCAATTAAAGGATGGAGTTCCAAAGTCACTTCACAATGCTTCTATTTTGCGTATATTGGACCTATCCAATAATAGTTTGAGTGAAAATCTTCCCACAATAATCCATCACTTATCCCAATATGTTCGATACTCATTGCAAC 1693 0.394 MQSRFKSCVAAVCFLSGAHKMHLKVLLSDGITTTKPTNKWKLYDGWILWFSLMSEEGGLKPGQEPIPKGMLRCYFCVMQPFLQVVHGEHQIRCLPKEREALLRFKAAIVDPYGMLSSWSTPNCCQWEGIRCSNLTAHILGLHLPGQYYFEYHDEEISERYISGEIHESLMELRQLEYLNLSSNSFEGSHIPEFLASLTKLKYLDLSSFWSLSHLKYLNLAYNSLEGSIPRELGNLSQLQYLDIGSNSLEGDVPSQLSNISQSSNLGGCNDIRRCYGTLKINEGGQWLSNVISLTHLSLQDISSFNTSPSYFRMIAKLPKLRELSVIHCGLSNHFLNSFQPSNFNFSTSLSVLDLSSNSFTQSMAGSTSNHFGLAMNSLQHLDLSYNVFKGEDLKSFMNICTLRSLYMHKNNMTEDLLSILRNFSNGCVRYSLQELQLSNNQITGSVSDLSIFKSLKSLDLSGNQLEHLSTGSKSLEDSVPICCRYSLRELYLGQNKFNGALPDFSMFSKLEILDVSGNQLKDGVPKSLHNASILRILDLSNNSLSENLPTIIHHLSQYVRYSLQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1102 564 Gene3D Ribonuclease Inhibitor 207 271 IPR032675 -
Pvu4g1102 564 Pfam Leucine Rich repeat 376 396 IPR001611 GO:0005515
Pvu4g1102 564 Pfam Leucine rich repeat N-terminal domain 96 132 IPR013210 -
Pvu4g1102 564 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515
Pvu4g1102 564 Pfam Leucine Rich Repeat 509 530 IPR001611 GO:0005515
Pvu4g1102 564 SUPERFAMILY L domain-like 93 549 - -
Pvu4g1102 564 SMART LRR_sd22_2 452 470 - -
Pvu4g1102 564 SMART LRR_sd22_2 235 261 - -
Pvu4g1102 564 SMART LRR_sd22_2 507 528 - -
Pvu4g1102 564 SMART LRR_sd22_2 531 550 - -
Pvu4g1102 564 Gene3D Ribonuclease Inhibitor 467 562 IPR032675 -
Pvu4g1102 564 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 207 500 - -
Pvu4g1102 564 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 80 208 - -
Pvu4g1102 564 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 486 550 - -
Pvu4g1102 564 Pfam Leucine rich repeat 207 248 IPR001611 GO:0005515
Pvu4g1102 564 Gene3D Ribonuclease Inhibitor 272 466 IPR032675 -
Pvu4g1102 564 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Pvu4g1102 564 Gene3D Ribonuclease Inhibitor 93 206 IPR032675 -
Pvu4g1102 564 ProSiteProfiles Leucine-rich repeat profile. 454 475 IPR001611 GO:0005515
Pvu4g1102 564 SMART LRR_typ_2 507 530 IPR003591 -
Pvu4g1102 564 SMART LRR_typ_2 452 475 IPR003591 -
Pvu4g1102 564 SMART LRR_typ_2 211 235 IPR003591 -
Pvu4g1102 564 SMART LRR_typ_2 172 197 IPR003591 -
Pvu4g1102 564 SMART LRR_typ_2 347 369 IPR003591 -
Pvu4g1102 564 SMART LRR_typ_2 375 398 IPR003591 -
Pvu4g1102 564 Pfam Leucine Rich repeats (2 copies) 431 469 IPR025875 -
Pvu4g1102 564 PANTHER LRR RECEPTOR-LIKE KINASE 80 208 - -
Pvu4g1102 564 PANTHER LRR RECEPTOR-LIKE KINASE 207 500 - -
Pvu4g1102 564 PANTHER LRR RECEPTOR-LIKE KINASE 486 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1102 Pvu-Chr4 32685497 32689022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1102 97 555 Receptor kinase-like Gene Family AT4G36180 29.865 4.48e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1102 - - pvu:PHAVU_004G1036000 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1102 4 32685497 32689022 Pvu4g1102 4 32685497 32689022 ECH