Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1557 ATGGAGGAGCCGAACTCCGATTGCTGGCTGCCACCAGGTTGGACTGTGGAAGTGAGGGTGAGAAAGAATGGTAAGAGAGACAAGTATTACTTCCCCCCCTCAAGTGGACTAAAATTCAATTCCAAGGTGGAGGTATTTCGCTATCTTGACAATGCTCAGAACAAAGTCAGCATCCAGAAAATCTCTCCTAATGTTATAGTTGAGAAAGCTATTGCGGAAGGGTTACCACCAGGAAGGGTGAAAAAGACCAGAATCACAACAAATGGAGATTCAGTTAGAAGAGATACGTTCTATATTGACCCTGTAAATGGTTATACATTCTGCTCAATAAAAGATGTTGATTGCTATCTTGAATCTGGAGAGATAGGAAGCTACGAATTCAAGTCAAAAGACAATGATGGCACTGATATGGAGTTAAAAGCTGACAAATCTCCTTCAACAAGTGTAACCGTGAAACCAACATTATCAATTAGCATGGGTCAAAGCTCAGACATGGACATGATAGCTAATGACCAACAGATTCCAAGATCTGCAAGTTCTGAAGAATATATGTCTGTGCCCATCTCTGAATGTATTTCCAATCAGTGTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTTCAGATAAAAAACAAGGGAAGGTTGGTGTAGCTCAAAGCGCTTCGGTTTCTGGTTGCACTAACAAAGATGCCGAAGAAAAGCAACTTCAAGAAAATTCAGAGACAAAACATGGCACTGAAAAAGCCCAGGCCAAAGATCCCCAGTGCAAAAACAAGCACAAGAAAGAGATCAATTTGCCTCGCCGTGCTTCAAAGCGTCTTGCTGGAATTAAGGTTGATCCTGTTCCGGAACTTAAAATAAGAAATAGAGCACGCCGTGTTACAGTTAAACAATCAGAGGAGGAGGAAACCATCACAAATGTAGATAAATCTGCCAACAGCTTGCTTGATGGTCTAGCAAAACAGAAATTAAATAACGAGGATACTGACAAGACTCTAGAAGTGCAAAGAAGCGACAAGGAAAAAGAATGCTTCTCTTTTTCGTCTCTGGAGAGCAATGCTACTGTGGAAGAGTGTGTGAGAGTCATTGAAAATGGAGATAAAGTTGATGCTAAGTTAGATTACACCCTTGACTTTCCCCTCAGAGAACTACTAACAGACCCTTGTATTGCATTTGCCATTCAAACACTCACTGGAGTAACATTCGAAGCCTCCAAAGACTTACAAACTTTTTCCGAGTTAAAAAACAGCCTGCATTCCAAAACTTCTGCTTCTGCCGCCGCCATTGGCGAAGGCGATGGTAAGAAAAGCAATGATGGGTTAGGTGGCAATGAGTTCTCATCTCCAGAGAACCTTGCTATTCCACCAGAACATGCTGGTGATGCCAAAACTGATTTAAAGGCCAAGAATGAGAATGCAGGACCATCTTCTGAAAAGACACTTGACATGTCATCATGGATGGATCCATGCATTGAATTTGCTATAAAAACTCTCACTGGCACCATCCCATCAGACTCTGCTGATCAAAATCCCAAGAACTGCCTCCAACAGCAACTCAGCTCATCAAATAGCCAACACAGTGAGATGGCCTTGTCAAGTGTCAGTTTAGATAACATATACAAAACTGACTACTCTTGCAGCCAATACTTTGACACACAGAAACCAATGTTTAATAAACAGTCTTTTGTGGATCCATCACTGCAGCACACCAGAAATATAGGTATTGGAAATTCTGCTGGATCCAGACTCTCTCACTGTGGTGAAAGATACTAG 1788 0.4195 MEEPNSDCWLPPGWTVEVRVRKNGKRDKYYFPPSSGLKFNSKVEVFRYLDNAQNKVSIQKISPNVIVEKAIAEGLPPGRVKKTRITTNGDSVRRDTFYIDPVNGYTFCSIKDVDCYLESGEIGSYEFKSKDNDGTDMELKADKSPSTSVTVKPTLSISMGQSSDMDMIANDQQIPRSASSEEYMSVPISECISNQCVVGAKLTSSVLSLAKSSDKKQGKVGVAQSASVSGCTNKDAEEKQLQENSETKHGTEKAQAKDPQCKNKHKKEINLPRRASKRLAGIKVDPVPELKIRNRARRVTVKQSEEEETITNVDKSANSLLDGLAKQKLNNEDTDKTLEVQRSDKEKECFSFSSLESNATVEECVRVIENGDKVDAKLDYTLDFPLRELLTDPCIAFAIQTLTGVTFEASKDLQTFSELKNSLHSKTSASAAAIGEGDGKKSNDGLGGNEFSSPENLAIPPEHAGDAKTDLKAKNENAGPSSEKTLDMSSWMDPCIEFAIKTLTGTIPSDSADQNPKNCLQQQLSSSNSQHSEMALSSVSLDNIYKTDYSCSQYFDTQKPMFNKQSFVDPSLQHTRNIGIGNSAGSRLSHCGERY* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1557 595 SMART TAM_2 3 73 IPR001739 GO:0003677
Gso16g1557 595 MobiDBLite consensus disorder prediction 507 531 - -
Gso16g1557 595 Pfam Methyl-CpG binding domain 75 121 IPR001739 GO:0003677
Gso16g1557 595 Pfam Methyl-CpG binding domain 4 57 IPR001739 GO:0003677
Gso16g1557 595 MobiDBLite consensus disorder prediction 236 266 - -
Gso16g1557 595 SUPERFAMILY DNA-binding domain 73 127 IPR016177 GO:0003677
Gso16g1557 595 Gene3D - 2 62 - -
Gso16g1557 595 MobiDBLite consensus disorder prediction 213 267 - -
Gso16g1557 595 MobiDBLite consensus disorder prediction 213 235 - -
Gso16g1557 595 MobiDBLite consensus disorder prediction 429 465 - -
Gso16g1557 595 Gene3D - 63 159 - -
Gso16g1557 595 PANTHER OS04G0193200 PROTEIN 1 590 IPR038945 -
Gso16g1557 595 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 70 IPR001739 GO:0003677
Gso16g1557 595 SUPERFAMILY DNA-binding domain 7 54 IPR016177 GO:0003677
Gso16g1557 595 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13 1 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1557 Gso-Chr16 36139653 36145079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1557 - - gsj:114388973 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1557 16 36139653 36145079 Gso16g1557 16 36139653 36145079 ECH
Gso16g1557 16 36139653 36145079 Gso9g1161 9 33275894 33280840 GST