Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0866 ATGAAGGAGCCTTCTTCGGATGACTGGCTTCCGCCGGGATGGAAGGTGGAGATGAAGCTGACCTCCACCGGTAGAAAATATAAGTGTTATATTCATCCCTCAAGGGGACTCAAATTCTATTCCAAGCCAGAGGTGTCTCGTTATCTCAACAAAGCTCCCCTCAATGATCGTGAATCCATACAGAAGAAATCCATAGAGAGGAAGACACCCATAAAGACAATGGCACCCGCAGGGAAGAAGAAATCCATGGAGAAGAAGAAACATTGCATTGCAAAAAAAGTTGTATTTGAGAGGGTAACAGCAGAAGGCCTGCCTCCAGGATGGATTAAGGAAATAAAAATACAAAAAAAGTGTGGTACAGTCAGAAGAGATGCGTATTACACTGATCCTGTAAATGGATATATATTCCGCTCAATGAAGGACACTCTTCGCTATCTTAAAACTGGAGACCCAGGAAGGCTTGCATTCAAGCCAAAGCCCAGAGACAGTGGTGATATCAATTTGGAAGATGATAAAACCTATTCACCTGTTGTTCCCAGAAAACAAGAATTAGCAGGTGGTGGAGCAAGAAGACAGATTACAAGGGGTCAGAGCTTGAAATTGGGCAAGATAGCAAGCGATGAAGGAATCCCTAAATCTGCCTGTTCAGGTGCAAAAGTCACAGAGAGCAGCTTATACCTCTCAGAAGCCAAGGGTTCAGAGCCTATAGGAGAGAAAAGTGATGATGCTAAAAATGTGTTAGATTCAGCGCCTTTGGTTGAGCCCCTTGCAGAAAAACAACCACTGGAAAATAGGGCGAAAGTTTGTGGAAAAAGGAAGACCCAACCTGGTCTGTGCAATTACAGGAACAAAAAATCTCATGACTTGCCACGTCGAGCTTCAAAACGACTTGCTGGGCTTGAAGCTGATGTGACACCAGAGCTGAAAACCACTAATCGAGGTAGTCGAGTTGCAGCTGGACATTCAGGTGAGATAGAAGCAGGTATTGCTGAGGCTGAGCCTAAGACAAAGTGCTCCTTTCAACCTTCCCAAAAGTTGGAAGTGTTATTGGAATCAAATAGTGGTAAAACTCCTGTTGAAGACTTGGTTCCTCCAGAAGAGCAAGCTGAAAAGGTTGAGGCTGAGAATAAGGACAAGGAGAAGCACGGGTGCTCTCTTTCCTTGCCTCTGGGGGATGGTCCTATTCCCATAGAGCATGCTGGAGTGGCTGAAGATGAAAATAAGGGGGCCGGGAATCCAGAACCCCCTCATGAGTTGCCTTTTGGGGATTCATGGACTGACCCATGTATTGAATTTGCAATAAAAACTCTTACGAGTGATCATCTGTTCATCGAGGACTACTTCCAGCAGCAACTCAGCTCACCACACGCCCAAACCAACAATGGCTCAAACTTTGGCTTGGGCAACTTGCAACAAACTGACTTTCCCTTCCAGCAATATGATGTGGCAGAAAATCCAGCACCTGAACTACAAGCACCTGTACAGCCTACATTCCTGAAAGACGGAAATGTCAACTTCCCAAGTTCAGGTGAGACTGGTGGATACCAACCCGGTGAAGATAAAAGCAAAGCATCTCTAAAAGCTCCAGCCCAAATAGACAATGGCTTGAACTTGGGGTTGGGTAACTTTCATCAAACTGACTTCTCATTTCAGCATAATGTCATGGCCCAAAATCCAGCACCCAAACCACAAGCACCTGTGCAGCCTATATTCCAGCAAGCCGGAAATGCCCGCTTCCTGAGTTCAGGTCAGACGGGGCTGCGCCAACCTGGTGAAGATAAGAGCAAGGAACTACAGGGGCCCACAATCCAGCCAGAGGGAAATGCCAGCTTCCCAAGTTCAGGTGCGACCGGTGGTCTACACCAACGAGGTGAAGATAAAAGCAAGGAATATCAGAAACAGTTGATATACTAG 1914 0.4608 MKEPSSDDWLPPGWKVEMKLTSTGRKYKCYIHPSRGLKFYSKPEVSRYLNKAPLNDRESIQKKSIERKTPIKTMAPAGKKKSMEKKKHCIAKKVVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPGRLAFKPKPRDSGDINLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIPKSACSGAKVTESSLYLSEAKGSEPIGEKSDDAKNVLDSAPLVEPLAEKQPLENRAKVCGKRKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNRGSRVAAGHSGEIEAGIAEAEPKTKCSFQPSQKLEVLLESNSGKTPVEDLVPPEEQAEKVEAENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPFGDSWTDPCIEFAIKTLTSDHLFIEDYFQQQLSSPHAQTNNGSNFGLGNLQQTDFPFQQYDVAENPAPELQAPVQPTFLKDGNVNFPSSGETGGYQPGEDKSKASLKAPAQIDNGLNLGLGNFHQTDFSFQHNVMAQNPAPKPQAPVQPIFQQAGNARFLSSGQTGLRQPGEDKSKELQGPTIQPEGNASFPSSGATGGLHQRGEDKSKEYQKQLIY* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0866 637 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 94 173 IPR001739 GO:0003677
Vvi16g0866 637 MobiDBLite consensus disorder prediction 622 637 - -
Vvi16g0866 637 MobiDBLite consensus disorder prediction 581 637 - -
Vvi16g0866 637 MobiDBLite consensus disorder prediction 363 384 - -
Vvi16g0866 637 MobiDBLite consensus disorder prediction 500 526 - -
Vvi16g0866 637 Pfam Methyl-CpG binding domain 5 61 IPR001739 GO:0003677
Vvi16g0866 637 Pfam Methyl-CpG binding domain 97 151 IPR001739 GO:0003677
Vvi16g0866 637 SUPERFAMILY DNA-binding domain 101 153 IPR016177 GO:0003677
Vvi16g0866 637 SUPERFAMILY DNA-binding domain 7 77 IPR016177 GO:0003677
Vvi16g0866 637 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 72 IPR001739 GO:0003677
Vvi16g0866 637 Gene3D - 74 183 - -
Vvi16g0866 637 PANTHER OS04G0193200 PROTEIN 1 503 IPR038945 -
Vvi16g0866 637 MobiDBLite consensus disorder prediction 353 384 - -
Vvi16g0866 637 Gene3D - 1 73 - -
Vvi16g0866 637 MobiDBLite consensus disorder prediction 601 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0866 Vvi-Chr16 16737775 16755228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0866 - - vvi:100263513 1288.09