LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g02225	ATGGAGATGTCGGACTCCGATGACCAACTTCCACCAGGTTGGACGGTGGAAGTGAGGGTGAGAAAGAATGGTAGGAGAGATAAGTATTACATTCTCCCCTCAACTGGACTAAAATTCAAATCCAAGGTGGAGGTATTTCGTCATCTTGACAATGCTAGTAACAAAGTCAGCATCCAGAAAATCTCTCCTAATGTTGTAGTTGAGAAAGCTAGTGCGGAAGGGTTACCACCAGGATGGGTGAAAAAGACCAGAATTGCAACTAAAGGAGATACAGTTAGAAGAGACACGTACTACATCGACCCTGTAAGTGGGTATACATTCCACTCCACTGAAGATGCTTATCACTATCTTGAATCTGGAGAGATAAGAAAGAACACACTCAAACCAAAAGATGGAGACAACAGTGAAACCAATTTAAAAGATGACAAATCTCCTTCAGTAACTATGAAACCAACATTATCAATTAGCATGGCTCAGAGTTCAAATTTGGACATGTTAGCAAATTATCAACAGAGTCCAAGATCTGCTAGTTCTGGAGAACATATGCATGTGCCCAATTCTAAGTTTATTTCCAATCATGGTTGCACTGACAAAGATACCCAAGAGAAGCAACTTCAAGAAAGCTCAGAAACAAAGCAAGGAACTGAAAAAGTGCAGGCCAAACATCATCGGCGCAGAAACAAGCACAAGAAACAGATAAATTTGCCTAGGAGATCTTCAAAGCGACTTGCTGGAATTAAGCTTGATCCTGTTCCAGAGCTTAAAACAAGAAATCGAACACGTCGAGCAGCAGTTAAACAATCAAGTGAGGAAAAAACTATCACAAATATGGATAAATCTTCCAGCAGCTTGCATGATGGTCTAGCTAAACAGCAACTAAGTGGCAAGGATAAAGAATGCTTCACTCTTTCACCTCCAGATAACAATGGTACTGTTGAAGAGTGTATGAGAGTCACTGAAGATGGAGATAAAGTTGATGCAAATTTAGATTACAGCCTTGACTTTCCCCTCAAAGAACTATTAACAGACCCTTGTATTGCATTTGCAATTCAAACTCTCACTGGCTTAACATTTGAGACCTCCAAAAACTCACAAACTTCTGAATTAAAAGACATCCAGCATTCTGAAATCTCTGCAGCCTCAGATAATGAAGGGCAAGGTAAGAAAAACAATGTAGGCAACAATGTGATCTCATCTCCAGTGCGTCTTGCTACTCCTCAAGAACATGCTGGTGATAATGCAGCCAAAACCGATATGAAAGCCAAGAACGCCGAGAACGAGAATGCATCACCATCTTCTGAAAAAACACTTGACATGTCATGGATGGATCCATGCATTGAATTTGCTATAAAAACTCTCACTGACTCCATCCCATTAGAGTCTGATCCAAACCCCAAGAACTGTCTTCAACAGCAGCTGAGTTCATCCAGTAACCAACACAGTGAGAGGACAATGTCAAATGTCAGTTTAAATAACACTTACCAAACTGACTACTATTGCAGCCAATACTTTGGCTCACAAAAGCCAATGTTTAAGCAGTCTTTTGTGGATCCATCATTGAAGCACACCAGAAACATTGGTATTGGAAATTCTGCTGGAGCAAGACTCTCTCACTGTGGTGAAGGTAACAGAAGGAATGTTTGTTAG	1647	0.4062	MEMSDSDDQLPPGWTVEVRVRKNGRRDKYYILPSTGLKFKSKVEVFRHLDNASNKVSIQKISPNVVVEKASAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYTFHSTEDAYHYLESGEIRKNTLKPKDGDNSETNLKDDKSPSVTMKPTLSISMAQSSNLDMLANYQQSPRSASSGEHMHVPNSKFISNHGCTDKDTQEKQLQESSETKQGTEKVQAKHHRRRNKHKKQINLPRRSSKRLAGIKLDPVPELKTRNRTRRAAVKQSSEEKTITNMDKSSSSLHDGLAKQQLSGKDKECFTLSPPDNNGTVEECMRVTEDGDKVDANLDYSLDFPLKELLTDPCIAFAIQTLTGLTFETSKNSQTSELKDIQHSEISAASDNEGQGKKNNVGNNVISSPVRLATPQEHAGDNAAKTDMKAKNAENENASPSSEKTLDMSWMDPCIEFAIKTLTDSIPLESDPNPKNCLQQQLSSSSNQHSERTMSNVSLNNTYQTDYYCSQYFGSQKPMFKQSFVDPSLKHTRNIGIGNSAGARLSHCGEGNRRNVC	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	170	243	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	195	217	-	-
	Viun4g02225	548	SUPERFAMILY	DNA-binding domain	7	54	IPR016177	GO:0003677
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	218	237	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	257	285	-	-
	Viun4g02225	548	PANTHER	OS04G0193200 PROTEIN	1	514	IPR038945	-
	Viun4g02225	548	Gene3D	-	5	59	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	269	285	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	170	194	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	405	436	-	-
	Viun4g02225	548	Gene3D	-	60	163	-	-
	Viun4g02225	548	SUPERFAMILY	DNA-binding domain	73	120	IPR016177	GO:0003677
	Viun4g02225	548	SMART	TAM_2	3	73	IPR001739	GO:0003677
	Viun4g02225	548	Pfam	Methyl-CpG binding domain	75	121	IPR001739	GO:0003677
	Viun4g02225	548	Pfam	Methyl-CpG binding domain	7	57	IPR001739	GO:0003677
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	125	149	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	461	484	-	-
	Viun4g02225	548	MobiDBLite	consensus disorder prediction	125	140	-	-
	Viun4g02225	548	ProSiteProfiles	Methyl-CpG-binding domain (MBD) profile.	1	70	IPR001739	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g02225	Viun-Chr4	37966676	37972209	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g02225	-		-	var:108343785	879.011

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun4g02225	4	37966676	37972209	Viun4g02225	4	37966676	37972209	ECH