Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02027 ATGGAGAAGACGGACTCCGATGACCAACTTCCACCAGGTTGGACTGTGGAAGTGAGAGTGAGAAAGAATGGTAGGAAAGACAAGTACTACATTCTCCCCTCAAGTGGACTAAAATTCAAATCCAAGGTGGAGGTATTTCGCCATATTGACAATGCTAGTAACAAAGACAATGCTAGTAACAAAGTCAGCATACAGAAAATCTCTCCCAATGTTGTAGTTGAGAAAGCTATTGCAGAAGGGTTACCACCAGGATGGGTGAAAAAGACCAGAATTGCAACAAAAGGAGATACAGTTAGAAGAGACACGTACTACATCGACCCTGTAAGTGGGTATACATTCCACTCAATTGAAGATGCTTATCACTATCTTGAATCTGGAGAGATAGAAAGGAACACATTCAAGCCAAAAGATGAAGACAACAATGATACAAATTCAAAAGATGATAAATCTCCGTCAGCTTGTGTGACCATGAAACCAACATTATCAATTAGCATGGCTCAGAGCTCAAATTTGGACAGGGTACCAAATTACCAACAGATTCCAAGATCTGCTAGTTCTGGAGAACATATGCATATGTCCGACTCAAACTGTATTTCCAATCATGGTGTGGTTGGAACTGAATTGACCAGTTCAGTTCCATCTCGGGATGAAAACTCAGATCAGAAAGAATTGAAGGTTGGTTTTGCTGAAAGTGATTTGAATTCAGGTTGCACTAACAAAGATACTCAAAAGAAGAAACTTCAAGAAAACACAGAGACAAAGCAAGGAACTGAAAAAGTGCAGACCCAACATAGTCAGGGCAGAAACAAACACAAGAAACAGATCAATTTGCCTCGCCGTTCTTCAAAGCGTCTTGCTGGAATTAAGCTTGATCCTGTTCCAGAACTTAAAACAAGAAATCGATCACGTCGAGCAGTGGTTAAACAGCCAAGTGAGGAAGAAACCATCATATATGTAGATAAATCTCCCAGCAGCTTGCATGATGATCTAGCTAAACAACAACTAAGTGACAAGGATAAAGAATGCTTCACTTTTTCACCTCTGGAGAACAATGCTACTGTTGAAGAGTGTATGAGAATCACTGAAAATGGAGATAAAGTTGATGCAAAGTTAGATTACAACCTTGGCTTTCCCCTCAAAGAACTGCTTACAGACCCTTGTATTGCATTTGCAATTCAAACTCTCACCGGCTTAACATTTGAGACCTCCAAAAACTCACAAACTTCTTCTGAATTAAAAGACATCCAACATTCTGAAAACTCTGCAGTCTTAGGTTGTGAAGGAGAAGGTAAGAAATGCAATGATGGATTAGGTGACAGTGTGTTCTTATCTCCAGGGAGCCTTGTTACTTCTCAAGAACACTCTGGTGATGCTGCCAATGCTGCCAAAACCGATATGAAAGCCAAGAATGAAAATGCATCACCATCTTCTGAAAAAACACTTGACATGTCATGGATGGATCCATGCATTGAATTTGCTATAAAAACTCTCACTGACTCCATCCCTTTAGACTCTGATCAAAACCCCAAGAAGTGCCTTCAACAGCAGCTCAGTTCATCTGGTAACCAGCACACTGAGAGGACAATGTCAAATGTCAGTTTAAATAATCCTTACCAAACTGACTACTATTGCAGCCAATACTTTGGCTCACAAAAGCCAATGTTTACACAATCTTTTGTGGATCCATCATTGAAGCACACCAGAAATATTGGCATTGGAAATTCTGCTGGAACAAGACTCTCTCATTGTGGTGAAGGTACTGGAAGGAATGTTTGTTAG 1779 0.4019 MEKTDSDDQLPPGWTVEVRVRKNGRKDKYYILPSSGLKFKSKVEVFRHIDNASNKDNASNKVSIQKISPNVVVEKAIAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYTFHSIEDAYHYLESGEIERNTFKPKDEDNNDTNSKDDKSPSACVTMKPTLSISMAQSSNLDRVPNYQQIPRSASSGEHMHMSDSNCISNHGVVGTELTSSVPSRDENSDQKELKVGFAESDLNSGCTNKDTQKKKLQENTETKQGTEKVQTQHSQGRNKHKKQINLPRRSSKRLAGIKLDPVPELKTRNRSRRAVVKQPSEEETIIYVDKSPSSLHDDLAKQQLSDKDKECFTFSPLENNATVEECMRITENGDKVDAKLDYNLGFPLKELLTDPCIAFAIQTLTGLTFETSKNSQTSSELKDIQHSENSAVLGCEGEGKKCNDGLGDSVFLSPGSLVTSQEHSGDAANAAKTDMKAKNENASPSSEKTLDMSWMDPCIEFAIKTLTDSIPLDSDQNPKKCLQQQLSSSGNQHTERTMSNVSLNNPYQTDYYCSQYFGSQKPMFTQSFVDPSLKHTRNIGIGNSAGTRLSHCGEGTGRNVC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02027 592 PANTHER OS04G0193200 PROTEIN 1 558 IPR038945 -
Vimu8g02027 592 Pfam Methyl-CpG binding domain 5 55 IPR001739 GO:0003677
Vimu8g02027 592 Pfam Methyl-CpG binding domain 80 127 IPR001739 GO:0003677
Vimu8g02027 592 MobiDBLite consensus disorder prediction 131 155 - -
Vimu8g02027 592 MobiDBLite consensus disorder prediction 131 146 - -
Vimu8g02027 592 MobiDBLite consensus disorder prediction 227 284 - -
Vimu8g02027 592 MobiDBLite consensus disorder prediction 182 202 - -
Vimu8g02027 592 Gene3D - 5 56 - -
Vimu8g02027 592 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 71 148 IPR001739 GO:0003677
Vimu8g02027 592 MobiDBLite consensus disorder prediction 507 531 - -
Vimu8g02027 592 MobiDBLite consensus disorder prediction 448 480 - -
Vimu8g02027 592 SUPERFAMILY DNA-binding domain 78 132 IPR016177 GO:0003677
Vimu8g02027 592 Gene3D - 57 161 - -
Vimu8g02027 592 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 69 IPR001739 GO:0003677
Vimu8g02027 592 SUPERFAMILY DNA-binding domain 7 54 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02027 Vimu-Chr8 26273109 26278224 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02027 - - var:108343785 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02027 8 26273109 26278224 Vimu8g02027 8 26273109 26278224 ECH