Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2588 ATGGAGGACCCAAACTCCGATGAGGGTCTGCCACCAGGTTGGCAAGTTGAAGTGAAGGTGAGAAAGAATGGCAAGAGATCAGACAAGTACTACATTTCCCCCTCAAGTGGACTAAAGTTCAATTCCAAGGCAGAGGTACTTCGTCATCTTGAGAGCGCGAACAAAGTCAGCATCCAGAGAATCTCAGAGAATGTTGTAGTTGAGAAACGTCCTGCAGAAGGATTACCACCAGGATGGATAAAAAAGACCAGAATCACAAATAAAGGAGATAAAATAAGAAGAGATCCGTTCTACATTGATCCTGTAAGTGGATACACGTTTCGCTCCATAAAAGATGTTGATCGCTACCTGGCATCTGGAAAGATAGGAAGGAATGCATTCAAGTCAAAAGACAACGACAAAGCTATTATGGTGTTAAAAGATGAAAAATTCTCTGCAAGGATGCCCAAGAAAGAGAACATCAATTTGCCTCGCCGTTCGTCCAAGCGGCTTGCTGGAATTAAGGCTGATCCTATTCTGGAACATAAAACAAGAAATCAGGTGCATAGATCTCCAGTTAAACAACCTGGTGAGGAAGAAACCACCACAGATGGAGATAAATCCACTAACAGCTTTCCTAATTGTCTGGAAAAACGGTTTAAGTCACTCGAGGAAGTCTCAGAAATCAAGTGCAAATCCGACAACACCGAAAATACAATTGAGTTACTGAAGCTGACTACTCCAGAAAAGCATCCTGTTAAGAAGGCAAAACAGTTTAAGTCACTCGAGGAAGGGTCAGAAATCAAGTACAAGTCCGACAACACCGATAATACAATTGAGTTACCGAAGTTGACTACTCCTGAAAAGCATCGTGTTAAGAAGGCAGAACAGTTTAAGTCACTTGAGGAAGGGTCAGAAATCAAGTGCAAATCCGACAACACCGATGATACAATTGAGTTACCAAAGTTGACTACTCCAGAAAAGCATCCTGTTAAGAATCTTGAAGTGCATAGAAGTGACAAGGATCAAGAATGCTTATCTATTTTGAGTGTCCCTGAAAATGGAGATAAGGTTGATGCAAAGTTAGGTTCCAACCCTGACTTTCCCCTCAAAGAAATATTATCAGACCCATGTATTGCATTTGCAATACAAACTCTCACTGGAACAACATGTGAAGCCTTCAAAGACCCTCTAATTTCTTCAGAATTGAAAAAAAGCCAGCACTCTGAAACTTCTGGAGCTTCTGCTGAAAGGCATGGTAAGAAAATCAATGTGCCGGGGGAGGTTTCGCCGAAACTTCCATCTCCAGAAGGCTTTGCTGTTACACAAGAACATGCTGGCGTTGCCAAAAATGATCATAAGACCAAAGAAAATGCAGGGTCAGCTTGTGAAAAGACACTTGATACTTCATTGATGGATCCATGTATCGAATTTGCAATCAAAACTCTCACTGCAACCATCCCAGTAGACTGTGATCAAAATCCTAAGAACTACATTCAACAGCAACTCAGCTCATCAAATACACAGAAGCCAAAGTTTAAACAGTCTTTTGTGGATCCAACACTGCAGCACACCAGAAATATTGTCATAGGAAATTCTGCTGGAGCCAGACACACCCGCTTTCGTAAAAACAGAAGGAATGTTTGCTAG 1629 0.4162 MEDPNSDEGLPPGWQVEVKVRKNGKRSDKYYISPSSGLKFNSKAEVLRHLESANKVSIQRISENVVVEKRPAEGLPPGWIKKTRITNKGDKIRRDPFYIDPVSGYTFRSIKDVDRYLASGKIGRNAFKSKDNDKAIMVLKDEKFSARMPKKENINLPRRSSKRLAGIKADPILEHKTRNQVHRSPVKQPGEEETTTDGDKSTNSFPNCLEKRFKSLEEVSEIKCKSDNTENTIELLKLTTPEKHPVKKAKQFKSLEEGSEIKYKSDNTDNTIELPKLTTPEKHRVKKAEQFKSLEEGSEIKCKSDNTDDTIELPKLTTPEKHPVKNLEVHRSDKDQECLSILSVPENGDKVDAKLGSNPDFPLKEILSDPCIAFAIQTLTGTTCEAFKDPLISSELKKSQHSETSGASAERHGKKINVPGEVSPKLPSPEGFAVTQEHAGVAKNDHKTKENAGSACEKTLDTSLMDPCIEFAIKTLTATIPVDCDQNPKNYIQQQLSSSNTQKPKFKQSFVDPTLQHTRNIVIGNSAGARHTRFRKNRRNVC* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2588 542 MobiDBLite consensus disorder prediction 174 206 - -
Lja2g2588 542 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677
Lja2g2588 542 MobiDBLite consensus disorder prediction 395 431 - -
Lja2g2588 542 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13 1 145 - -
Lja2g2588 542 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13 149 503 - -
Lja2g2588 542 Pfam Methyl-CpG binding domain 75 121 IPR001739 GO:0003677
Lja2g2588 542 Pfam Methyl-CpG binding domain 7 57 IPR001739 GO:0003677
Lja2g2588 542 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 70 IPR001739 GO:0003677
Lja2g2588 542 PANTHER OS04G0193200 PROTEIN 1 145 IPR038945 -
Lja2g2588 542 PANTHER OS04G0193200 PROTEIN 149 503 IPR038945 -
Lja2g2588 542 SMART TAM_2 2 73 IPR001739 GO:0003677
Lja2g2588 542 Gene3D - 5 57 - -
Lja2g2588 542 SUPERFAMILY DNA-binding domain 73 124 IPR016177 GO:0003677
Lja2g2588 542 Gene3D - 58 166 - -
Lja2g2588 542 MobiDBLite consensus disorder prediction 174 198 - -
Lja2g2588 542 MobiDBLite consensus disorder prediction 404 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2588 Lja-Chr2 35000024 35003330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2588 - - lja:Lj2g3v0276760.2 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2588 2 35000024 35003330 Lja2g2588 2 35000024 35003330 ECH