Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0789 . . . Aed5g0172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu02g02783 . . . . . .
Pvu11g0790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0792 . . Adu03g00175 Aed5g0503 Aev04g3026 . Ahy13g0363 Aip03g00373 . Amo13g0330 . Apr3g1378 . . . . Car06g03501 . . . . . Gma12g00619 Gma11g01660 Gso12g0572 Gso11g1531 . . . . . . . Lasa7g01663 . . . . . Mal7g2115 Mepo2g01900 . . Mtr4g1754 Phac11g01153 Phco9g00854 . Psa7g5141 . . . . Spst11g01376 . . Tpr4g1716 Trre7g01634 . . . Vimu5g01949 . . .
Pvu11g0793 . . Adu03g00174 . . . Ahy13g0362 Aip03g00372 . Amo13g0329 . . . . . . Car06g03500 Cca04g00770 . . . . Gma12g00618 Gma11g01659 Gso12g0571 Gso11g1530 . . . . . . . Lasa7g01662 . . . . . . Mepo2g01899 . . Mtr4g1753 . . . . . . Rops3g00930 . Spst11g01375 . . Tpr4g1715 Trre7g01631 . Vian5g01194 Vifa6g00630 Vimu5g01948 Viun11g01967 . .
Pvu11g0794 . . . Aed5g0506 Aev04g3025 . Ahy13g0361 . . . . Apr3g1377 . . . . . Cca04g00771 . Dod03g2816 . . Gma12g00617 . Gso12g0570 . . . . Lan7g0289 . . . . . . . . . Mal7g2114 . . . . . Phco9g00855 . . . . Rops3g00932 . . . . . . . . . . Viun11g01966 . .
Pvu11g0795 . . Adu03g00173 . . . . Aip03g00371 . Amo13g0327 . . . . . Bva07g02422 Car06g03498 Cca04g00772 . . . . Gma12g00616 Gma11g01658 Gso12g0569 Gso11g1529 . Lal2g0280 . Lan7g0290 Lan8g1677 . . Lasa7g01652 . . . . . . Mepo2g01896 . . Mtr4g1751 . . . . . . Rops3g00933 . Spst11g01374 Ssu3g2517 . Tpr4g1712 Trre7g01629 . Vian5g01193 Vifa6g00628 Vimu5g01947 Viun11g01965 . .
Pvu11g0796 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0797 . . . Aed5g0507 Aev04g3024 . Ahy13g0359 Aip03g00368 . . . Apr3g1376 . . . . . Cca04g00773 . . . . Gma12g00615 Gma11g01657 Gso12g0568 Gso11g1528 . Lal2g0282 . Lan7g0291 . . . . . . . . . Mal7g2111 . . . . . Phco9g00856 . . . . . . . . . . . . . . . Viun11g01964 . Vra2g0707
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0788 Chr11 7084956 7085053 +
Pvu Pvu11g0789 Chr11 7105239 7111607 -
Aed Aed5g0172 Chr5 1234076 1238858 +
Tsu Tsu02g02783 Chr02 29928642 29934303 +
Pvu Pvu11g0790 Chr11 7121076 7122768 +
Pvu Pvu11g0791 Chr11 7122922 7123300 +
Pvu Pvu11g0792 Chr11 7137439 7138314 -
Adu Adu03g00175 Chr03 1597907 1598844 -
Aed Aed5g0503 Chr5 3656262 3657149 -
Aev Aev04g3026 Chr04 30005241 30006089 +
Ahy Ahy13g0363 Chr13 3629895 3631707 +
Aip Aip03g00373 Chr03 3554288 3555440 -
Amo Amo13g0330 Chr13 4431498 4432373 -
Apr Apr3g1378 Chr3 28268549 28269629 +
Car Car06g03501 Chr06 65890757 65891985 +
Gma Gma12g00619 Chr12 5168424 5169305 +
Gma Gma11g01660 Chr11 17951623 17952656 +
Gso Gso12g0572 Chr12 5130672 5131871 +
Gso Gso11g1531 Chr11 17801184 17802351 +
Lasa Lasa7g01663 Chr7 410298918 410299802 +
Mal Mal7g2115 Chr7 75417583 75418458 +
Mepo Mepo2g01900 Chr2 27745612 27746719 -
Mtr Mtr4g1754 Chr4 30268676 30269829 +
Phac Phac11g01153 Chr11 7756856 7757978 -
Phco Phco9g00854 Chr9 6620909 6621754 -
Psa Psa7g5141 Chr7 450204705 450206439 -
Spst Spst11g01376 Chr11 38218205 38218999 +
Tpr Tpr4g1716 Chr4 17688873 17690109 +
Trre Trre7g01634 Chr7 12495117 12495992 +
Vimu Vimu5g01949 Chr5 31366224 31367066 +
Pvu Pvu11g0793 Chr11 7141737 7142582 -
Adu Adu03g00174 Chr03 1588558 1589725 +
Ahy Ahy13g0362 Chr13 3628004 3629771 -
Aip Aip03g00372 Chr03 3550064 3550921 +
Amo Amo13g0329 Chr13 4428145 4429530 +
Car Car06g03500 Chr06 65885476 65886665 +
Cca Cca04g00770 Chr04 7683157 7684408 -
Gma Gma12g00618 Chr12 5165291 5166348 +
Gma Gma11g01659 Chr11 17937911 17938822 +
Gso Gso12g0571 Chr12 5127613 5128705 +
Gso Gso11g1530 Chr11 17788216 17789441 +
Lasa Lasa7g01662 Chr7 410232115 410232990 +
Mepo Mepo2g01899 Chr2 27742449 27743684 +
Mtr Mtr4g1753 Chr4 30265407 30266540 +
Rops Rops3g00930 Chr3 11835634 11836714 -
Spst Spst11g01375 Chr11 38214897 38215694 +
Tpr Tpr4g1715 Chr4 17685090 17686238 +
Trre Trre7g01631 Chr7 12488879 12489700 +
Vian Vian5g01194 Chr5 34446719 34447516 +
Vifa Vifa6g00630 Chr6 239263802 239264686 +
Vimu Vimu5g01948 Chr5 31363974 31364771 +
Viun Viun11g01967 Chr11 35361588 35362743 +
Pvu Pvu11g0794 Chr11 7144889 7145740 -
Aed Aed5g0506 Chr5 3665350 3666093 -
Aev Aev04g3025 Chr04 30003107 30003871 +
Ahy Ahy13g0361 Chr13 3621877 3623253 +
Apr Apr3g1377 Chr3 28263734 28264712 +
Cca Cca04g00771 Chr04 7687474 7688525 -
Dod Dod03g2816 Chr03 60023030 60023884 +
Gma Gma12g00617 Chr12 5160956 5161792 +
Gso Gso12g0570 Chr12 5123247 5124412 +
Lan Lan7g0289 Chr7 1859700 1861091 -
Mal Mal7g2114 Chr7 75410276 75411115 +
Phco Phco9g00855 Chr9 6625092 6625943 -
Rops Rops3g00932 Chr3 11846414 11847471 -
Viun Viun11g01966 Chr11 35357987 35359076 +
Pvu Pvu11g0795 Chr11 7147953 7148750 -
Adu Adu03g00173 Chr03 1585206 1587314 +
Aip Aip03g00371 Chr03 3545200 3545982 +
Amo Amo13g0327 Chr13 4415338 4416300 +
Bva Bva07g02422 Chr07 19579636 19580732 +
Car Car06g03498 Chr06 65872463 65873931 +
Cca Cca04g00772 Chr04 7690604 7691608 -
Gma Gma12g00616 Chr12 5157101 5158212 +
Gma Gma11g01658 Chr11 17934822 17935632 +
Gso Gso12g0569 Chr12 5119608 5120787 +
Gso Gso11g1529 Chr11 17785227 17786380 +
Lal Lal2g0280 Chr2 1645844 1646677 -
Lan Lan7g0290 Chr7 1862641 1863844 -
Lan Lan8g1677 Chr8 23691428 23692869 +
Lasa Lasa7g01652 Chr7 408753657 408754412 +
Mepo Mepo2g01896 Chr2 27716334 27717360 +
Mtr Mtr4g1751 Chr4 30244097 30245384 +
Rops Rops3g00933 Chr3 11852757 11853870 -
Spst Spst11g01374 Chr11 38210407 38211814 +
Ssu Ssu3g2517 Chr3 77639550 77640329 +
Tpr Tpr4g1712 Chr4 17665133 17666700 +
Trre Trre7g01629 Chr7 12480016 12480771 +
Vian Vian5g01193 Chr5 34442277 34443074 +
Vifa Vifa6g00628 Chr6 239182206 239182961 +
Vimu Vimu5g01947 Chr5 31357943 31358740 +
Viun Viun11g01965 Chr11 35355848 35357131 +
Pvu Pvu11g0796 Chr11 7149672 7153553 +
Pvu Pvu11g0797 Chr11 7152416 7153207 -
Aed Aed5g0507 Chr5 3668522 3669313 -
Aev Aev04g3024 Chr04 29997779 29998582 +
Ahy Ahy13g0359 Chr13 3608613 3610667 +
Aip Aip03g00368 Chr03 3536633 3538725 +
Apr Apr3g1376 Chr3 28259771 28261287 +
Cca Cca04g00773 Chr04 7695360 7698547 -
Gma Gma12g00615 Chr12 5152393 5153601 +
Gma Gma11g01657 Chr11 17930461 17931636 +
Gso Gso12g0568 Chr12 5114822 5116157 +
Gso Gso11g1528 Chr11 17780948 17782157 +
Lal Lal2g0282 Chr2 1648328 1649095 -
Lan Lan7g0291 Chr7 1865000 1866268 -
Mal Mal7g2111 Chr7 75364611 75365423 +
Phco Phco9g00856 Chr9 6630332 6631126 -
Viun Viun11g01964 Chr11 35352004 35353103 +
Vra Vra2g0707 Chr2 6023680 6024862 -