Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01947 ATGGTGATGATGAAGCATCCACTCTTCTCTCTCACCCTCCCACTTCTTCCAATACTACTTTTTTCTCATCCCATCATCTCTCTAGCCCAGTCACCCGCCGCCGCACCAACCGCCCCCGCCAAGGCCACCACAGCCATCACTCCGGCCCCGGTACCCTCCTCACCTCCCACAGACATTATCAGAATCCTCAAAAAGGCCGGGGGATTCACCACCCTTATCCGTCTCCTTCAAGCCACGCAAGTTTCCAACCAAATCAACTCCCAACTCCTTACCACAAACGGCGGCTTAACCTTATTTGCACCAAACGACAATGCCTTTTCAAGCCTCAAACCTGGCTTCCTCAACTCCCTCAACGACCAACAAAAGAACGAGCTCATCCAGTTCCACTTGCTCCCCACATTCGTTTCCGTTTCAAACTTTGACACTCTCAGCAACCCCGTGAGAACACAGGCCGGTGAAAACCCTGATAGGTTGGCACTGAACATAACAAGCTCAGGAGGGAACCAAGTGAACATGACCACGGGGATCGTCAACGTTACATTAGGTGGCACTGTGTACACCGATCACCAGCTTGCGGTTTACCAAGTGGACAAGGTGCTTCTTCCACGGGATTTCTTTGTTGCCAAGCCTCCTACTCCAGCTCCAGCGCCAGAAAAGCCAAAAGGGTCTAAGAAGAAATCTGCAGACAGCACTGGAACTCCTGCAGATGATGCTGAATCTGCTGCTATCAGTGTGAAACAGCAGCATGTGATGTGGGTTGCTGTTGCTGCACTTTCAGTTGCAGCAGTTTCGTGGTGA 798 0.5163 MVMMKHPLFSLTLPLLPILLFSHPIISLAQSPAAAPTAPAKATTAITPAPVPSSPPTDIIRILKKAGGFTTLIRLLQATQVSNQINSQLLTTNGGLTLFAPNDNAFSSLKPGFLNSLNDQQKNELIQFHLLPTFVSVSNFDTLSNPVRTQAGENPDRLALNITSSGGNQVNMTTGIVNVTLGGTVYTDHQLAVYQVDKVLLPRDFFVAKPPTPAPAPEKPKGSKKKSADSTGTPADDAESAAISVKQQHVMWVAVAALSVAAVSW 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01947 265 ProSiteProfiles FAS1/BIgH3 domain profile. 56 200 IPR000782 -
Vimu5g01947 265 SUPERFAMILY FAS1 domain 42 203 IPR036378 -
Vimu5g01947 265 MobiDBLite consensus disorder prediction 210 240 - -
Vimu5g01947 265 Gene3D FAS1 domain 33 203 IPR036378 -
Vimu5g01947 265 SMART fasc_3 97 203 IPR000782 -
Vimu5g01947 265 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 249 IPR045003 -
Vimu5g01947 265 FunFam Fasciclin-like arabinogalactan protein 11 31 202 - -
Vimu5g01947 265 Pfam Fasciclin domain 68 202 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01947 Vimu-Chr5 31357943 31358740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01947 - - gmx:100791643 380.948