Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01949 ATGAAACAAGCAACTATTTTCTCCTTATCACTCTTCCTACTCCTTTGGTCTACCACCTTGGCCATTTCACCAGCACCTGCAGCAGCTCCAAAAGCCCCAGCAGCAAAAACTCCCCATACCCCAAAGGCTGCAGCACCATCACCAAAACCATTAGTCCCCACATTACCTCAGTCTCCAGACTCCCCTGACTCTGTCCCTGATGACATTACCAGAATCCTCAAAAAGGCCAAAATGTTCTCAACCCTCATTCGCCTCCTCAAAACCACAGAAATCATCAACAACGTCAACTCACAGCTCATAACAGCCAAGACTGGGGGCATAACCATTCTTGCACCAGATGATTCTGCCTTTTCAAACCTCAAAGCTGGCTTCCTCAATTCCCTCAACGAAGGCCAGAAAATTGAACTTGTCCAGTTCCACATATTGCCAGAGTATGTGTCAAGCTCAAACTTTGATTCTCTTAGCAACCCTGTGCAGACAGTGGCTGGTAAAGACCCTGTAAGGCTTCCACTGAATGTGAATGCATTAGGTAACAGTGTCAACATTTCAACTGGGGTTGTCAATGCCACCATTCTTGGAGTAGTATACTCTGATAATAAACTTGGGATTTATCACGTGGACAAGGTACTTCTTCCTCTAGATTTCTTTGTAACCAACAAGGCTCCAGCTTTGGCTCCTTCATCTCTTGCAAAGGCTCCCAAAGCTGCTAAAGAAAACTCTTCTGATGACGATCAAGAAGAAACAAACCAGGATCACAATAAATCTGGGGCACTCAGTTTGAGCAGAACAAAGTTGATGTCACTTGGGATAGCCTTGGTCGCTATGGCAACCATGTGGAGTTGA 843 0.4543 MKQATIFSLSLFLLLWSTTLAISPAPAAAPKAPAAKTPHTPKAAAPSPKPLVPTLPQSPDSPDSVPDDITRILKKAKMFSTLIRLLKTTEIINNVNSQLITAKTGGITILAPDDSAFSNLKAGFLNSLNEGQKIELVQFHILPEYVSSSNFDSLSNPVQTVAGKDPVRLPLNVNALGNSVNISTGVVNATILGVVYSDNKLGIYHVDKVLLPLDFFVTNKAPALAPSSLAKAPKAAKENSSDDDQEETNQDHNKSGALSLSRTKLMSLGIALVAMATMWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01949 280 Gene3D FAS1 domain 54 212 IPR036378 -
Vimu5g01949 280 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 263 IPR045003 -
Vimu5g01949 280 MobiDBLite consensus disorder prediction 236 251 - -
Vimu5g01949 280 SMART fasc_3 108 213 IPR000782 -
Vimu5g01949 280 SUPERFAMILY FAS1 domain 49 213 IPR036378 -
Vimu5g01949 280 ProSiteProfiles FAS1/BIgH3 domain profile. 66 210 IPR000782 -
Vimu5g01949 280 Pfam Fasciclin domain 78 212 IPR000782 -
Vimu5g01949 280 MobiDBLite consensus disorder prediction 29 67 - -
Vimu5g01949 280 MobiDBLite consensus disorder prediction 43 60 - -
Vimu5g01949 280 MobiDBLite consensus disorder prediction 228 256 - -
Vimu5g01949 280 FunFam Fasciclin-like arabinogalactan protein 11 54 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01949 Vimu-Chr5 31366224 31367066 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01949 - - pvu:PHAVU_011G074500g 429.869