Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01948 ATGAAGGTATCAGTTTTATTCTCCCTCTTACTCCTCATACCTTTTTCCTCCTTATATTCAACCACATTAGCTCAAGCACCTGCTGCAGCTCCATCTAAACCAATTGTCTCAACACTATCTCAGTCACCCTCTTCAGACACCTCTGATTCTTCCCCTGATGACCTCATCGGAATATTGAGGAAGGCCAAATCATTTAACATCCTAATTCGCCTGATGAAAACCACCCAATTGATCAACCAACTCAATGCTCAGCTCATAACCATAAAATCAGGTGGATTAACCATCTTTGCCCCAGATGACAGTAGCTTTTCACATCTCAAAGTAGGGTTCCTGAACTCCCTGGCTGACAATCAAAAGATAGAACTTCTGCAGTTCCATGTTCTTCCCACTTATGTTTCAAGCTCAAACTTTGATTCTCTGAGCAACCCTGTGAGAACACTAGCTGGGGATAACCCTGCCAGGTTGCAACTAAACGTGACAGCTTATGGCAACAATGTTAATATCTCAACAGGAGTGGTCAATGCCACGGTTACAGGAGTTATATACTCAGATAAGGTGCTTGCTATATATCATGTGGACAAGGTGCTTCTTCCTTTGGACTTCTTCAAGCCTAAGCCACCAGCTCCTGCACCCTCTCCAGAAATAGCACCAAAAACTGATAATGATAACTCATCTGCTGCTGATAATCTTGGAACATCCAAGGACAGTTCTGGCGCATTCAGTTTGACGAGTTCTCCAGGAACAACGTTGGTGTCCCTTGGAGTTTCTTTAGTTGCATTGGTGATTATTTCAAGTTGA 798 0.4311 MKVSVLFSLLLLIPFSSLYSTTLAQAPAAAPSKPIVSTLSQSPSSDTSDSSPDDLIGILRKAKSFNILIRLMKTTQLINQLNAQLITIKSGGLTIFAPDDSSFSHLKVGFLNSLADNQKIELLQFHVLPTYVSSSNFDSLSNPVRTLAGDNPARLQLNVTAYGNNVNISTGVVNATVTGVIYSDKVLAIYHVDKVLLPLDFFKPKPPAPAPSPEIAPKTDNDNSSAADNLGTSKDSSGAFSLTSSPGTTLVSLGVSLVALVIISS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01948 265 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6 244 IPR045003 -
Vimu5g01948 265 ProSiteProfiles FAS1/BIgH3 domain profile. 52 196 IPR000782 -
Vimu5g01948 265 SMART fasc_3 94 199 IPR000782 -
Vimu5g01948 265 Gene3D FAS1 domain 28 198 IPR036378 -
Vimu5g01948 265 MobiDBLite consensus disorder prediction 217 232 - -
Vimu5g01948 265 FunFam Fasciclin-like arabinogalactan protein 11 38 198 - -
Vimu5g01948 265 MobiDBLite consensus disorder prediction 208 232 - -
Vimu5g01948 265 Pfam Fasciclin domain 64 198 IPR000782 -
Vimu5g01948 265 SUPERFAMILY FAS1 domain 51 199 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01948 Vimu-Chr5 31363974 31364771 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01948 - - gmx:100791112 351.673