Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2517 atggtgatgatgatgaagcATCCGCTCTTCTCTCTCCCACTTCTTCTACTAGTCTTCTCCCGTTACACCACCACTATAGCTCAGTCACCTGCGGCGGCACCAACCGCCCCCGCCGCGGCGGCCCCGGCCCCGGTACCTTCAGCACCCCCCACGGACATCATCAGAATCCTCAAAAAGGCCGGAGGGTTCACCACCCTAATCCGTCTTCTTCAGGCCACACAAGTGTCCAACCAAATGAACTCCCAACTCCTTACTACAAACGGTGGCTTAACCTTATTTGCACCAAATGACAATGCCTTTTCCAGCCTCAAACCCGGCTTCCTCAATTCCCTTAATGATCAGCAAAAGAACGAGCTCGTCCAATTTCACTTGCTACCCCAATGCGTTTCCGTATCAAACTTTGACACACTGAGCAACCCAGTGAGAACACAGGCCGGTGAAAACCCTGATAGGTTGGCACTGAACATAACAAGCTCAGGAGGAAACCAAGTAAACATGACAACAGGCATTGTTAACGTTACACTGGGTGGCACCGTGTACACTGATCACCAGCTTGCGGTTTACCAGGTGGACAAGGTGCTTCTTCCTCGGGACTTCTTTGTTGCTAAGTCTCCTGCTCCAGCTCCTGCACCAGAAAAGCCTAAGGGGTCTAAGAAAAAATCTGCAGACAGCACTGCAACTCCAGCAGATGATGCTGAATCTGCTGCTATCAGTGTCAAACAAAGGCATGTGATGTGGGTTGCAGTTGTTGCACTTTTAGTTGCAGCATTTTTTTGGTGA 780 0.4936 MVMMMKHPLFSLPLLLLVFSRYTTTIAQSPAAAPTAPAAAAPAPVPSAPPTDIIRILKKAGGFTTLIRLLQATQVSNQMNSQLLTTNGGLTLFAPNDNAFSSLKPGFLNSLNDQQKNELVQFHLLPQCVSVSNFDTLSNPVRTQAGENPDRLALNITSSGGNQVNMTTGIVNVTLGGTVYTDHQLAVYQVDKVLLPRDFFVAKSPAPAPAPEKPKGSKKKSADSTATPADDAESAAISVKQRHVMWVAVVALLVAAFFW 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2517 259 Gene3D FAS1 domain 26 197 IPR036378 -
Ssu3g2517 259 SUPERFAMILY FAS1 domain 39 197 IPR036378 -
Ssu3g2517 259 SMART fasc_3 91 197 IPR000782 -
Ssu3g2517 259 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 254 IPR045003 -
Ssu3g2517 259 Pfam Fasciclin domain 62 196 IPR000782 -
Ssu3g2517 259 ProSiteProfiles FAS1/BIgH3 domain profile. 50 194 IPR000782 -
Ssu3g2517 259 MobiDBLite consensus disorder prediction 205 230 - -
Ssu3g2517 259 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2517 Ssu-Chr3 77639550 77640329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2517 - - gmx:100791643 360.147