Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0339 . . . Aed2g1612 . . . . . . . Apr10g0253 . . . . Car07g03265 Cca01g01360 . . . . Gma03g00834 . . Gso3g0802 . . . . . . . Lasa4g00203 . . . . . . Mepo1g04505 Mesa29g05192 . Mtr8g0260 Phac10g00357 . . Psa4g4766 Pste7g00444 Pumo7g02138 Rops4g00322 Seca4g10358 Spst4g01607 Ssu2g0670 . . Trre15g00282 Tsu08g00225 Vian9g01347 Vifa4g01582 Vimu9g01491 Viun10g00420 Vivi7g03544 Vra9g0865
Pvu10g0340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0341 . . Adu09g00642 . Aev09g0428 Ahy19g0744 . Aip09g00827 . Amo19g0718 . Apr10g0247 . Bach6g01348 . Bva02g01019 . . . . . . Gma03g00837 . . Gso3g0806 . . Lal19g0067 . Lan1g0896 . . . . . . . . . . . . . . Phco1g01805 . . Pste7g00442 . . . . . . . . . . . Vimu9g01492 . . Vra9g0863
Pvu10g0342 . . Adu09g00646 Aed2g1615 Aev09g0426 Ahy19g0746 . Aip09g00829 . Amo19g0721 . Apr10g0244 . Bach6g01523 . Bva02g00701 . Cca01g01361 . . . . Gma03g00844 Gma16g00722 Gso16g0659 Gso3g0809 . . Lal19g0066 . Lan1g0897 . Lapu10g00936 Lasa4g00204 . . . . Lja3g2871 . Mepo1g04506 Mesa29g05195 . Mtr8g0255 Phac10g00358 Phco1g01806 . Psa4g4768 Pste7g00436 Pumo7g02127 Rops4g00327 . Spst4g01609 Ssu2g0677 . . Trre15g00277 . Vian9g01350 Vifa4g01585 Vimu9g01493 Viun10g00414 Vivi7g03543 Vra9g0862
Pvu10g0343 . . . . . . . . . . . . . . . . . . . . . . . Gma16g00721 . . . . . . . . . . . . . . . . . . . . . Phco1g01807 . . . . . . . . . . . . . . Vimu9g01496 . . Vra9g0860
Pvu10g0344 . . Adu09g00647 Aed2g1617 Aev09g0425 Ahy19g0747 . Aip09g00830 . . . Apr10g0242 . . . . Car07g03268 Cca01g01363 . . . . Gma03g00846 Gma16g00720 . Gso3g0810 . . . . Lan1g0898 . Lapu10g00934 Lasa4g00210 . . . . Lja3g2899 Mal5g0285 . . . Mtr8g0240 . Phco1g01808 . . Pste7g00434 Pumo7g02125 Rops4g00332 . Spst4g01067 Ssu2g0678 . . Trre15g00266 Tsu08g00214 Vian9g01352 Vifa4g01597 Vimu9g01500 Viun10g00404 Vivi7g03522 Vra9g0859
Pvu10g0345 . . . Aed2g1618 . . . . . . . . . . . . . Cca01g01366 . . . . . Gma16g00717 Gso16g0657 . . . . . . . . . . . . . . . . . . . . Phco1g01811 . . Pste7g00433 Pumo7g02124 . Seca4g10357 Spst4g01069 Ssu2g0680 . . . . . . Vimu9g01501 Viun10g00401 . Vra9g0857
Pvu10g0346 . . . Aed2g0803 . . . . . . . . . . . . . Cca01g01368 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01812 . . Pste7g00430 Pumo7g02122 . Seca4g10354 Spst4g01071 Ssu2g0681 . . . . . . Vimu9g01502 . . .
Pvu10g0347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g0855
Pvu10g0348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01814 . . . . . . . . . . . . . . Vimu9g01509 . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0339 Chr10 4752514 4761768 -
Aed Aed2g1612 Chr2 20256555 20257392 -
Apr Apr10g0253 Chr10 6113744 6131177 +
Car Car07g03265 Chr07 60251823 60254670 +
Cca Cca01g01360 Chr01 26337579 26349613 -
Gma Gma03g00834 Chr03 30251866 30260497 -
Gso Gso3g0802 Chr3 28799420 28808916 -
Lasa Lasa4g00203 Chr4 7659189 7664552 -
Mepo Mepo1g04505 Chr1 52807163 52811451 -
Mesa Mesa29g05192 Chr29 85298188 85304223 -
Mtr Mtr8g0260 Chr8 2882413 2889122 +
Phac Phac10g00357 Chr10 4671594 4681282 -
Psa Psa4g4766 Chr4 418348381 418355241 -
Pste Pste7g00444 Chr7 4280421 4292366 +
Pumo Pumo7g02138 Chr7 59026871 59042021 +
Rops Rops4g00322 Chr4 9735183 9742826 -
Seca Seca4g10358 Chr4 239124646 239131904 +
Spst Spst4g01607 Chr4 55469265 55476887 -
Ssu Ssu2g0670 Chr2 37430617 37439796 -
Trre Trre15g00282 Chr15 1943075 1950127 +
Tsu Tsu08g00225 Chr08 2015687 2023706 -
Vian Vian9g01347 Chr9 28710743 28715080 -
Vifa Vifa4g01582 Chr4 459757350 459764141 -
Vimu Vimu9g01491 Chr9 24062978 24072801 -
Viun Viun10g00420 Chr10 3657310 3666788 +
Vivi Vivi7g03544 Chr7 101150409 101156619 +
Vra Vra9g0865 Chr9 10209084 10217271 +
Pvu Pvu10g0340 Chr10 4781886 4784027 +
Pvu Pvu10g0341 Chr10 4785760 4788667 -
Adu Adu09g00642 Chr09 8283129 8286253 -
Aev Aev09g0428 Chr09 3743542 3747454 +
Ahy Ahy19g0744 Chr19 10480155 10483361 -
Aip Aip09g00827 Chr09 10727302 10731771 -
Amo Amo19g0718 Chr19 11137017 11140204 -
Apr Apr10g0247 Chr10 5852123 5854372 +
Bach Bach6g01348 Chr6 14260142 14263247 +
Bva Bva02g01019 Chr02 14487269 14489562 +
Gma Gma03g00837 Chr03 30328851 30330712 -
Gso Gso3g0806 Chr3 28876953 28880063 -
Lal Lal19g0067 Chr19 525055 529228 +
Lan Lan1g0896 Chr1 19738614 19741300 -
Phco Phco1g01805 Chr1 57563387 57565808 -
Pste Pste7g00442 Chr7 4269885 4272882 +
Vimu Vimu9g01492 Chr9 24078362 24080474 -
Vra Vra9g0863 Chr9 10188091 10191162 +
Pvu Pvu10g0342 Chr10 4790248 4803162 -
Adu Adu09g00646 Chr09 8370788 8382206 -
Aed Aed2g1615 Chr2 20316152 20327038 -
Aev Aev09g0426 Chr09 3720527 3730837 +
Ahy Ahy19g0746 Chr19 10502682 10514565 -
Aip Aip09g00829 Chr09 10744690 10760418 -
Amo Amo19g0721 Chr19 11159244 11171409 -
Apr Apr10g0244 Chr10 5789819 5818755 +
Bach Bach6g01523 Chr6 20021637 20052337 -
Bva Bva02g00701 Chr02 10287408 10305197 +
Cca Cca01g01361 Chr01 26371594 26387792 +
Gma Gma03g00844 Chr03 30408760 30420770 -
Gma Gma16g00722 Chr16 9241464 9266132 +
Gso Gso16g0659 Chr16 9151506 9176454 +
Gso Gso3g0809 Chr3 28956449 28968836 -
Lal Lal19g0066 Chr19 514134 524471 +
Lan Lan1g0897 Chr1 19745244 19757210 -
Lapu Lapu10g00936 Chr10 11127945 11140021 +
Lasa Lasa4g00204 Chr4 7681744 7694008 -
Lja Lja3g2871 Chr3 46675336 46705477 +
Mepo Mepo1g04506 Chr1 52849992 52858575 -
Mesa Mesa29g05195 Chr29 85334881 85342618 -
Mtr Mtr8g0255 Chr8 2844023 2852621 +
Phac Phac10g00358 Chr10 4698609 4712031 -
Phco Phco1g01806 Chr1 57568328 57581405 -
Psa Psa4g4768 Chr4 418371027 418387677 -
Pste Pste7g00436 Chr7 4231488 4244152 +
Pumo Pumo7g02127 Chr7 58696654 58710125 +
Rops Rops4g00327 Chr4 9813346 9829761 -
Spst Spst4g01609 Chr4 55496004 55508782 -
Ssu Ssu2g0677 Chr2 37584972 37605750 -
Trre Trre15g00277 Chr15 1907119 1915607 +
Vian Vian9g01350 Chr9 28753410 28773392 -
Vifa Vifa4g01585 Chr4 460278335 460289401 +
Vimu Vimu9g01493 Chr9 24084864 24101287 -
Viun Viun10g00414 Chr10 3628276 3638812 +
Vivi Vivi7g03543 Chr7 101126869 101137075 -
Vra Vra9g0862 Chr9 10168533 10182050 +
Pvu Pvu10g0343 Chr10 4809578 4809961 +
Gma Gma16g00721 Chr16 9175128 9175628 -
Phco Phco1g01807 Chr1 57583933 57584301 +
Vimu Vimu9g01496 Chr9 24125491 24125871 +
Vra Vra9g0860 Chr9 10152428 10152808 -
Pvu Pvu10g0344 Chr10 4849961 4857055 +
Adu Adu09g00647 Chr09 8402278 8407141 +
Aed Aed2g1617 Chr2 20349828 20351829 +
Aev Aev09g0425 Chr09 3710335 3716516 -
Ahy Ahy19g0747 Chr19 10527125 10532105 +
Aip Aip09g00830 Chr09 10772301 10777335 +
Apr Apr10g0242 Chr10 5767718 5775953 -
Car Car07g03268 Chr07 60286890 60295100 +
Cca Cca01g01363 Chr01 26503282 26523386 +
Gma Gma03g00846 Chr03 30575091 30584118 +
Gma Gma16g00720 Chr16 9049364 9057435 -
Gso Gso3g0810 Chr3 29122474 29131442 +
Lan Lan1g0898 Chr1 19759651 19764137 +
Lapu Lapu10g00934 Chr10 11111595 11120167 -
Lasa Lasa4g00210 Chr4 8064411 8067407 +
Lja Lja3g2899 Chr3 49581811 49591866 +
Mal Mal5g0285 Chr5 4711074 4714405 -
Mtr Mtr8g0240 Chr8 2706435 2709795 -
Phco Phco1g01808 Chr1 57596230 57603428 +
Pste Pste7g00434 Chr7 4212065 4219453 -
Pumo Pumo7g02125 Chr7 58652034 58661834 -
Rops Rops4g00332 Chr4 9964288 9973066 +
Spst Spst4g01067 Chr4 43345715 43352183 +
Ssu Ssu2g0678 Chr2 37632402 37648126 +
Trre Trre15g00266 Chr15 1826270 1829567 -
Tsu Tsu08g00214 Chr08 1929894 1933641 -
Vian Vian9g01352 Chr9 28806681 28811795 +
Vifa Vifa4g01597 Chr4 462167986 462171196 +
Vimu Vimu9g01500 Chr9 24144841 24150446 -
Viun Viun10g00404 Chr10 3460155 3464553 -
Vivi Vivi7g03522 Chr7 100856971 100860392 -
Vra Vra9g0859 Chr9 10136460 10142444 +
Pvu Pvu10g0345 Chr10 4865782 4873066 +
Aed Aed2g1618 Chr2 20393355 20401216 -
Cca Cca01g01366 Chr01 26580999 26642484 +
Gma Gma16g00717 Chr16 8874609 8909076 -
Gso Gso16g0657 Chr16 8871206 8904764 -
Phco Phco1g01811 Chr1 57639450 57653233 +
Pste Pste7g00433 Chr7 4195909 4196370 -
Pumo Pumo7g02124 Chr7 58634961 58637734 -
Seca Seca4g10357 Chr4 239101134 239107687 -
Spst Spst4g01069 Chr4 43374878 43381636 +
Ssu Ssu2g0680 Chr2 37700670 37705144 +
Vimu Vimu9g01501 Chr9 24171116 24182117 +
Viun Viun10g00401 Chr10 3407664 3413682 -
Vra Vra9g0857 Chr9 10077557 10083705 -
Pvu Pvu10g0346 Chr10 4884563 4888968 +
Aed Aed2g0803 Chr2 6058653 6059255 -
Cca Cca01g01368 Chr01 26720065 26733888 +
Phco Phco1g01812 Chr1 57661838 57673411 +
Pste Pste7g00430 Chr7 4166189 4181433 -
Pumo Pumo7g02122 Chr7 58539659 58557619 -
Seca Seca4g10354 Chr4 239083254 239091786 -
Spst Spst4g01071 Chr4 43418021 43420817 +
Ssu Ssu2g0681 Chr2 37791370 37813543 +
Vimu Vimu9g01502 Chr9 24182820 24183422 +
Pvu Pvu10g0347 Chr10 4896774 4897595 -
Vra Vra9g0855 Chr9 10056548 10057204 +
Pvu Pvu10g0348 Chr10 4910725 4911375 -
Phco Phco1g01814 Chr1 57698102 57698509 -
Vimu Vimu9g01509 Chr9 24228814 24229221 -