Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2871 ATGGCGGAATTCGTAGATCTCGAATCCCAAGACGGCGTGCGCATGCCGTGGAACGTGATCCCCGGCACCAAGCAAGAGGCCACGAACGCCGTCGTTCCGGTGGCGGCAATCTACACTCCCATAAAGCACTTTCCCTCGATGCCCGTCCTCCCTTACACCCCGCTTCGCTGTCGCACGTGCCGCTCCATCCTCAACCCCTTCTGCATGGTCGACTTCGTCGCCAAGATCTGGATCTGCCCCTTCTGCTTCAACCGCAACCACTTCCCCCCTCACTACGCCTCCATCTCCGACGACAACCTCCCCGCCGAGCTCTTCCCCCACTACACTACCGTCGAGTACGATTCCCCCTCCGACACCTCCCCGCACGTGCCCCCCGTCTTCCTCTTCGTCATCGACACGTGCGTCATTGAGGAGGAGATCGGCTTCCTGAGGTCCGCCGTCTCCCAGGCCGTCGAGCTCCTGCCGGAGAATTCCCTTGTCGGACTCATCACCTTCGGGACCTTCGTCCATGTCCACGAGCTCGGGTTCGGTCTTGTCCCCAAAACCTACGTTTTCAGGGGCTCCAAGGACGTTTCTAAGGACCAGCTGCTCGAGCAGATGAGTTTCTTCGCAAAGAAGCCGAAGCCGGTGGTTGGTGTTGTCGCTGGCGCACGGGATGGGCTCTCGTCGGAGAGCATTAAGCGTTTCCTGCTTCCCGCGTCCGAGTGCGAGTTCGCGCTCAATTCGGTTCTGGATGAGCTGCAGAAGGATCCGTGGCCGATGCCGGGTGATCAGCGGGCGACAAGGTGCACAAGCACGGCTTTGAGTATTGCAGCCAGTTTGCTGGGGGCCTGTGTTCCTGGTTCCGCGGCAAGAATCATGGCGTTCATTGGGGGACCCGCGACTGAAGGACCAGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGATAAAGATTCTGTGCCATATTACCATAAATGCGTGAAATTCTATGATGGACTTTCAAAGCAGCTTGTACATCAGGGTCATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGCATTGCTGAACTTAAAACTGCTGTTGAAAGGACTGGGGGCCTTGTTGTACTCGCGGAGAGTTTTGGCCATCCAGTATTTAAGGAATCACTTAAACGTGTTTTCCAATCTGGTGATTATGATCTAGGCCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACATTAAAGTCCAAGGAATTATTGGCCCATGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGAGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCAACATCATTATGTCTGTTTTTCGACATTGTGAGGAAGGAAAGTCCTGATGCTACAATGCAGTCCACAAGCAATCAATTTTTCTTCCAATTCTTGACATATTATCAGAATAACAGTGGGCAAATGAGATTTCGAGTTACCACCCTTTCACGTCGATGGGTTGCTGGACCAGGAAGCGTGCAGGCTGAATTTGATCCTATCAGATGGTTGGATAAGGCATTGATAAATTTGTGTTCCCGGTTTGGAGATTTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCGATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTATGCATTTTGTGTTTTTAG 1722 0.5087 MAEFVDLESQDGVRMPWNVIPGTKQEATNAVVPVAAIYTPIKHFPSMPVLPYTPLRCRTCRSILNPFCMVDFVAKIWICPFCFNRNHFPPHYASISDDNLPAELFPHYTTVEYDSPSDTSPHVPPVFLFVIDTCVIEEEIGFLRSAVSQAVELLPENSLVGLITFGTFVHVHELGFGLVPKTYVFRGSKDVSKDQLLEQMSFFAKKPKPVVGVVAGARDGLSSESIKRFLLPASECEFALNSVLDELQKDPWPMPGDQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPYYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHPVFKESLKRVFQSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKESPDATMQSTSNQFFFQFLTYYQNNSGQMRFRVTTLSRRWVAGPGSVQAEFDPIRWLDKALINLCSRFGDFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVCILCF* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2871 573 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Lja3g2871 573 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Lja3g2871 573 SUPERFAMILY vWA-like 123 391 IPR036465 -
Lja3g2871 573 Pfam Sec23/Sec24 helical domain 519 567 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lja3g2871 573 Gene3D - 51 110 - -
Lja3g2871 573 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 568 IPR037364 -
Lja3g2871 573 SUPERFAMILY Zn-finger domain of Sec23/24 45 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja3g2871 573 SUPERFAMILY beta-sandwich domain of Sec23/24 4 508 - -
Lja3g2871 573 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja3g2871 573 Gene3D - 8 503 - -
Lja3g2871 573 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 568 - -
Lja3g2871 573 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lja3g2871 573 SUPERFAMILY Helical domain of Sec23/24 513 569 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2871 Lja-Chr3 46675336 46705477 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2871 K14006 - gmx:100803793 1038.48