Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01368 ATGGCTAATCGATGGGAAGAGTTTAAGAAAATAATGAAGGAAGACAAGGAAAACTTGCTCAAGTGGTTTGACCTATTTGGGAACAACGCCATCCACGTTGCAACTCGCTCTAACAACCCTAAACTCCTCAAAGAACTAATAGAAATGGTGCCTATAGAAGATAGGTGGCAAGCCATGTACATGGAAAATCGTCAAGGGAACACGATTTTGCATGAGATTGTGTTTTGTAAAAAGGTGCAAATGGCTGATGTTGTGTTTGAGAAGGAAGATGAGTTGTTGCaacaagaagaagaagtagaagatggtgtagaaaaaAGGGCATCATTAATTGAGCACAAAAACCGACGAGGTGAAACCCCTTTTTTCATGGCTGCCATGTACGGAAAGCTAAAGATGCTAAAGCACATGGCAAATCGTATAGCCACACATAATATGGGAAATTTTCGAAAACATCTACATAGATCTGAATATTGTTCTGCTCTTCACGCTAGTGTCATTGGTCAATATTTCGATGTTGCAATTTGGTTAGTAAGAATGGATAAAGAACTTGCACTTGAAAAGGATGAGAAAGGATCAACATGTCTTCAATTACTTTCCAAAATGCCACAGGTTTTTCGAAGCCATGCTCACATGGGACTAATAAAGAGCCTCATATATACATTGCTTCCTGATGATGGATATGAAATTGAAGACGGTGAAACTCTTTGCTTGTTTAAACATAAAACAGATTTAGAAAATGGTAAAATAGATGAAAGGAAACTCCCTAAATCAGTTATTTCGAAGATCAACTACAAATTCTGGAAACGCTTAGCAACAGAGTTTGAAGGGCTTGATCATATGTGGAAGCAAAAGAAAAAACATAAGTTAGCTGAAAGTCTAGCAAATATTTTAGTGCAATATGATTTATCCTGGCAAATATCTCATAATGACCATAAATGGATAACATTGATTACAATGCCACATCTTCCTTTCAATGTGGCCAAAAGGAGAAGGTTAAGTGAAAGTAAGAGGCAAGAGAGACATAAGGTTGATAAAGAATCTCTTCATGAGCGAATACCATTACTCATGGCAGCTAAAACGGGAATCATAGAAATTGTTGAAAAAATCCTTGAAGCGAATCCTTCAGCTATCTTTCATGTTACTAAACATGGGCAGAACATATTGAACATGGCTATCCAATATCGTCAGAAAAAGGTTATTCGAATCATTAGAAAAAAAGGTGCACTTGAATCCTTGTTTCCTCAAATCACAGACAAAGGTCGCACAATCTTGCACGAAGTTGCAAGGATGGACTATTACAAACCTGGACGCTTAGCTGGTGTGGCATTTCAATTACAAGACGAGTTGCGTTGGTATGAT 1359 0.3672 MANRWEEFKKIMKEDKENLLKWFDLFGNNAIHVATRSNNPKLLKELIEMVPIEDRWQAMYMENRQGNTILHEIVFCKKVQMADVVFEKEDELLQQEEEVEDGVEKRASLIEHKNRRGETPFFMAAMYGKLKMLKHMANRIATHNMGNFRKHLHRSEYCSALHASVIGQYFDVAIWLVRMDKELALEKDEKGSTCLQLLSKMPQVFRSHAHMGLIKSLIYTLLPDDGYEIEDGETLCLFKHKTDLENGKIDERKLPKSVISKINYKFWKRLATEFEGLDHMWKQKKKHKLAESLANILVQYDLSWQISHNDHKWITLITMPHLPFNVAKRRRLSESKRQERHKVDKESLHERIPLLMAAKTGIIEIVEKILEANPSAIFHVTKHGQNILNMAIQYRQKKVIRIIRKKGALESLFPQITDKGRTILHEVARMDYYKPGRLAGVAFQLQDELRWYD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01368 453 SUPERFAMILY Ankyrin repeat 2 432 IPR036770 -
Cca01g01368 453 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 27 449 - -
Cca01g01368 453 Gene3D - 2 217 IPR036770 -
Cca01g01368 453 PANTHER CASKIN 27 449 - -
Cca01g01368 453 Gene3D - 310 439 IPR036770 -
Cca01g01368 453 SMART ANK_2a 156 185 IPR002110 GO:0005515
Cca01g01368 453 SMART ANK_2a 65 94 IPR002110 GO:0005515
Cca01g01368 453 SMART ANK_2a 383 413 IPR002110 GO:0005515
Cca01g01368 453 SMART ANK_2a 26 54 IPR002110 GO:0005515
Cca01g01368 453 SMART ANK_2a 116 145 IPR002110 GO:0005515
Cca01g01368 453 SMART ANK_2a 349 379 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01368 Cca-Chr1 26720065 26733888 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01368 - - ccaj:109812492 896.345