Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01806 ATGGAGAGCCATCTGAGTGGAGAGAGAGAGAGACACCAAAAGCACTACGATCGCTCTCTCGTGTTCCTTCCTTTTCTTCTCACCGATCCTCTCACCATGGCCGAATTCTTGGATCTCGAATCCCAAGACGGCGTGCGCATGCCATGGAACGTGATCCCAGGCACCAAGCAGGACGCCCTAAACGCCGTCGTTCCGGTCTCCGTTGTCTACACTCCTATAAAGCACTTCCCCTCCATGCCAGTCCTCAATTACACGCCTCTACGCTGCCGCACGTGCCGCTCCGTCCTCAATCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCTCCGCACTACGCCTCAATATCTGATGAATCCCTCCCCGCGGAGCTCTTCCCGCAGTACACCACCGTCGAGTACAACTCCGACGCCTCCTCCTCCGCCGACGCCGCCGTACCTCCCGTGTTCCTCTTCGTCGTCGATACCTGCATCATCGAGGAGGAGATCGGCTTCCTGCGCTCTGCGCTGGCGCAGGCCGTCGAGCTCCTCCCCGAGAATTCGCTTGTTGGACTCATCACCTTCGGGACGTTAGTGCATGTTCACGAGTTAGGGTTTGCTGCGCTGCCGAAGACGTACGTCTTCAAGGGATCGAAGGATGTCACCAAGGACCAGCTCCTCGAACAGATGAGCTTCTTCGCCAAGAAGCCACGCCCGGCCGTCGGTGTGGTCGCCGGCGCGCGCGACGGGCTCTCCTCTGACAGTATTTCGCGGTTCCTCGTGCCGGCGTCCGAGTGCGAGTTCACAATCAATTCGGTTTTGGAGGAGCTGCAGAAAGATCCTTGGGCAGTGCCCGCAGATCAGAGAGCAACTCGGTGTACCAGCACGGCTCTGAGTATCGCAGCAAGTTTGTTAGGGGCATGTGTCCCTGGTTCAGCTGCGAGAATAATGGCTTTTATTGGTGGACCTGCTACCGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGATCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTACATCAAGGACATGTGCTAGATCTCTTTGCTTGTGCTCTTGATCAGGTAGGAATTGCCGAACTTAAAACTGCTGTTGAAAGGACTGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGTCATTCAGTGTTCAAAGATTCACTTAAGCGTGTTTTCCAGTCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAATCCAGGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGTCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCAACATCGCTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGTCCTGAGGCAGCCATGCAGGCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAATGGGCAGATGAGATTACGGGTTACGACACTTTCACGTAGATGGATTGCTGGACCGGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGTCAAGTCTCTTACAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATCTGTGTTCCCGATTTGGGGAATTTCAAAAGGACGCACCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTCCGACGTTCTCAGTTTGTTCAGGTCTTTAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCGTTGATATCTTATTCATTCCATTCTGGTCCGGAACCAGCACTTCTTGATGTTGCTGCCATTGCGGCTGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACAATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAATTGCTGCGAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTACCTCGCCTGGTCATTTGTGATCAGCACGGCTCTCAGGCTCGATTTCTACTAGCAAAGTTAAATCCTTCTGCGACTTACAACACCGAAAATTATCATCCTGGAGGTGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAAAGATTAGTAGTTCAATAA 2391 0.4818 MESHLSGERERHQKHYDRSLVFLPFLLTDPLTMAEFLDLESQDGVRMPWNVIPGTKQDALNAVVPVSVVYTPIKHFPSMPVLNYTPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDESLPAELFPQYTTVEYNSDASSSADAAVPPVFLFVVDTCIIEEEIGFLRSALAQAVELLPENSLVGLITFGTLVHVHELGFAALPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSSDSISRFLVPASECEFTINSVLEELQKDPWAVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKIQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPEAAMQATSNQFYFQFLTYYQNNNGQMRLRVTTLSRRWIAGPESIQDLIAGFDQEAAAIVMARQVSYKMETEAEFDPIRWLDKALINLCSRFGEFQKDAPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDSDLIIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTENYHPGGDIIFTDDVSFEVFLDHLQRLVVQ 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01806 796 SUPERFAMILY beta-sandwich domain of Sec23/24 36 553 - -
Phco1g01806 796 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 36 795 IPR037364 -
Phco1g01806 796 FunFam Protein transport protein SEC23 83 142 - -
Phco1g01806 796 FunFam Protein transport protein SEC23 656 760 - -
Phco1g01806 796 FunFam Protein transport protein SEC23 551 683 - -
Phco1g01806 796 Gene3D Severin 656 760 IPR029006 -
Phco1g01806 796 SUPERFAMILY Helical domain of Sec23/24 554 656 IPR036175 GO:0006886|GO:0006888|GO:0030127
Phco1g01806 796 Gene3D - 40 537 - -
Phco1g01806 796 Pfam Gelsolin repeat 668 754 IPR007123 -
Phco1g01806 796 FunFam Protein transport protein SEC23 423 540 - -
Phco1g01806 796 Pfam Sec23/Sec24 beta-sandwich domain 436 539 IPR012990 -
Phco1g01806 796 SUPERFAMILY Zn-finger domain of Sec23/24 77 146 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco1g01806 796 Gene3D von Willebrand factor, type A domain 158 433 IPR036465 -
Phco1g01806 796 Gene3D Sec23/Sec24 helical domain 551 794 - -
Phco1g01806 796 Pfam Sec23/Sec24 zinc finger 86 124 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco1g01806 796 CDD Sec23_C 646 766 IPR037550 GO:0030127|GO:0090114
Phco1g01806 796 FunFam Protein transport protein SEC23 158 434 - -
Phco1g01806 796 Pfam Sec23/Sec24 trunk domain 157 424 IPR006896 GO:0006886|GO:0006888|GO:0030127
Phco1g01806 796 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 657 796 IPR036180 -
Phco1g01806 796 Gene3D - 83 142 - -
Phco1g01806 796 Pfam Sec23/Sec24 helical domain 554 652 IPR006900 GO:0006886|GO:0006888|GO:0030127
Phco1g01806 796 SUPERFAMILY vWA-like 157 425 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01806 Phco-Chr1 57568328 57581405 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01806 1 57568328 57581405 Phco1g01806 1 57568328 57581405 ECH