Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0066 ATGGCTGAATTCCTTGACCTAGAAATCCAAGACGGTGTTCGTATGCCATGGAACGTAATCCCAGGCACCAAATCTGAAGCCGCCAACGCCGTCGTCCCCGTCGCCGCAATCTACACTCCGATCAAACACTTCCCTTCAATGCCCGTCCTTCCTTATTCCCCTCTCCGATGCCGTACTTGTCGCTCCGTTCTCAATCCTTTCTCCATCGTCGATTTCGCCGCCAAGATCTGGATCTGTCCTTTTTGCTTCCAACGCAACCATTTCCCGCCACACTACGCTTCAATCTCCGATGATAATCTTCCAGCTGAGTTATTTCCACAATACACAACAATTGAATATGAGACACCTGGTGATACTACTCCGATCGTTCCACCTGTTTTCATGTTCGTCGTTGATACGTGTGTCATTGAGGAAGAGATGAGTTACCTTAAGTCGTCGTTGTCGCAAGCGATTGAGTTATTACCGGAGAATTCGCTTGTTGGATTGATCACGTTTGGGACTTTTGTACATGTTCATGAGTTAGGGTTTGGTCAGATTCCGAAAACTTATGTGTTTAAAGGCTCTAAGGATTTGTCTAAGGATCAGCTTCTTGAGCAGATGAGTTTTTTTGCTAAGAAGCCGAAACCGGCTGTTGGTGTTATTGCTGGTGCTAGGGATGGGCTTTCATCCGAGAGTATTTCGCGGTTCTTGTTGCCTGCATCTGAGTGCGAGTTCACTCTCAATTCGGTTTTGGAAGAGCTGCAGAAGGATCCTTGGCAAGTACCGGCTGATCAGAGAGCGACTAGGTGCACCAGTACAGCATTAAGCATTGCAGCTAGTTTGTTGGGGGCATGTGTTCCCGGTTCAGCGGCGAGGATAATGGCGTTTATTGGTGGACCAGCTACTGAAGGATCTGCTCCTATTGTGTCAAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTTCCATAAATGTGTCAAATTCTATGACGGGCTTTCAAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGTATTGCTGAACTTAAATCTGCTGTTGAAAGTACTGGGGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCACCAAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAATCAGCTGATTTTGATCTGGGTCTATCATCAAATGGAATATTTGAGATAAACTGCTCCAAGGACATGAAAGTCCAAGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGAAAGGTCCATTGGTTTCAGATACTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGTCTGTTTTTCGACATTGTGAGGAAGGAAACTCCTGATGCTACAGCACAGGCGACAAGCAATCAATTTTATTTTCAATTCTTGACTTATTATCAGAATAACAGTGGACAAATGAGATTCCGGGAGTTGATTGCTGGATTTGATCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGATAAGGCATTGATAAATTTGTGTTCCCGGTTTGGAGATTTTCAGAAAGAAACTCCGTCTTCTTTCAGCTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGCTCCCAATTTGTTCAGGTATTCAACAACAGCCCAGATGAGACTGCATACTTTAGAATGATACTGAACCGCGAAAATGTTTCCAATTCTGTTGTAATGGTTCAGCCTTCGTTGATTTCTTATTCATTCCATTCGGGTCCTGAACCAGCTCTTCTTGATGTGGCAGCCATTGCGGCTGATAGAATCCTTCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACCATTGCTCAATGGCGAAAGGCTGGATATCATAATGAACCGGAGCATCAGGCATTTGCTCAGCTGCTACGAGCTCCTCATGATGATTCAGATTTGATAGTAAAGGAAAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCCCAGGCTCGATTTCTGCTAGCAAAGTTAAACCCTTCTGCTACATATAACACTGAAGCTGCTCTTCCTGGAGGGGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCCTTGATCATTTACAGAGATTAGTAGTTCAGTAA 2241 0.4391 MAEFLDLEIQDGVRMPWNVIPGTKSEAANAVVPVAAIYTPIKHFPSMPVLPYSPLRCRTCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYETPGDTTPIVPPVFMFVVDTCVIEEEMSYLKSSLSQAIELLPENSLVGLITFGTFVHVHELGFGQIPKTYVFKGSKDLSKDQLLEQMSFFAKKPKPAVGVIAGARDGLSSESISRFLLPASECEFTLNSVLEELQKDPWQVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGSAPIVSKQLSEPIRSHKDLDKDSVPHFHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKSAVESTGGLVVLAESFGHQVFKDSLKRVFQSADFDLGLSSNGIFEINCSKDMKVQGIIGPCASLEKKGPLVSDTVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKETPDATAQATSNQFYFQFLTYYQNNSGQMRFRELIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDFQKETPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVSNSVVMVQPSLISYSFHSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDSDLIVKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTEAALPGGDIIFTDDVSFEVFLDHLQRLVVQ 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0066 746 Pfam Sec23/Sec24 helical domain 504 602 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lal19g0066 746 SUPERFAMILY beta-sandwich domain of Sec23/24 4 497 - -
Lal19g0066 746 CDD Sec23_C 596 716 IPR037550 GO:0030127|GO:0090114
Lal19g0066 746 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 607 746 IPR036180 -
Lal19g0066 746 SUPERFAMILY Helical domain of Sec23/24 504 606 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal19g0066 746 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 746 IPR037364 -
Lal19g0066 746 Pfam Sec23/Sec24 trunk domain 124 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal19g0066 746 SUPERFAMILY Zn-finger domain of Sec23/24 45 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal19g0066 746 Gene3D - 51 110 - -
Lal19g0066 746 Pfam Gelsolin repeat 618 704 IPR007123 -
Lal19g0066 746 Gene3D - 8 497 - -
Lal19g0066 746 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Lal19g0066 746 Pfam Sec23/Sec24 beta-sandwich domain 402 497 IPR012990 -
Lal19g0066 746 Gene3D Severin 606 710 IPR029006 -
Lal19g0066 746 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal19g0066 746 SUPERFAMILY vWA-like 123 391 IPR036465 -
Lal19g0066 746 Gene3D Sec23/Sec24 helical domain 501 744 - -
Lal19g0066 746 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0066 Lal-Chr19 514134 524471 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0066 K14006 - gmx:100803793 1367.06