Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00936 ATGGCCGAATTCTTGGATCTCGAATCCCAAGACGGCGTGCGCATGCCCTGGAACGTGATCCCAGGCACCAAGCAGGACGCCCTAAACGCCGTCGTTCCGGTCTCCGTTGTCTACACTCCCATAAAGCACTTCCCCTCCATGCCTGTCCTCAATTACACGCCCCTTCGATGCCGCACTTGCCGCTCCGTACTCAATCCCTTCTGCATCGTCGATTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCGCACTACGCCTCCATATCCGATGAATCCCTCCCTGCCGAGCTCTTCCCGCAGTACACCACCGTCGAGTACAACTCCGACGCCTCCTCGGCCGCCTCCTCCGCCGTTCCTCCCGTCTTCCTCTTCGTCGTTGACACCTGCGTCATCGAGGAGGAGATCGGCTTCCTGCGCTCCGCGCTCGCGCAGGCCGTCGAGCTCCTCCCCGAGAATTCGCTCGTTGGACTCATCACCTTCGGGACGTTCGTGCATGTTCACGAGTTAGGGTTCACTGCGGTACCGAAGACTTACGTCTTCAAGGGATCGAAGGATGTCACCAAGGACCAGCTCCTCGAACAGATGAGCTTCTTCGCCAAGAAGCCCCGCCCGGCCATCGGTGTGGTTGCTGGCGCGCGCGACGGGCTCTCTGCGGACAGTATTTCGCGGTTCCTCGTGCCGGCGTCTGAGTGCGAGTTCACGATCAATTCGGTTTTGGAGGAGTTGCAGAAAGATCCTTGGGCGGTGCCGGCAGATCAGAGAGCAACTCGGTGTACCAGCACAGCTCTGAGTATCGCAGCAAGTTTGTTGGGGGCATGTGTCCCAGGTTCTGCTGCGAGAATAATGGCATTTATTGGTGGACCGGCTACTGAAGGACCTGCTCCTATTGTGTCCAAACAACTTTCTGAACCAATTCGATCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAGTGTGTGAAATTCTATGAGGGACTTTCGAAGCAGCTTGTACATCAAGGACATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAGACTGCTGTTGAAAGGACCGGAGGCCTAGTTGTACTTGCTGAAAGTTTTGGTCATTCAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTGCAGGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCACTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGCCCTGATGCAACCATGCAATCCACAAGCAATCAATTATACTTCCAATTCTTGACTTATTATCAGAACAGCAATGGGCAGATGAGATTACGGGTTACAACACTTTCACGGAGATGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCCGCTATAGTCATGGCACGTCAAGTCTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATTAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCCCGATTTGGGGAATTTCAAAAAGACACACCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCACTTCCGACGCTCTCAGTTTGTTCAGGTCTTCAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTCTTATTCATTCCATTCTGCTCCAGAACCAGCTCTTCTTGATGTTGCTGCCATTGCAGCTGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACAATTGCTCAGTGGCGTAAGGCTGGATATCATAACGAACCTGAACATCAGGCATTTGCTCAATTGCTACGAGCTCCTCACGACGATGCGGATTTAATTATAAAGGAGAGATTTCCTGTACCTCGCCTGGTCATTTGTGATCAGCATGGCTCTCAGCACGTCTATACATGTGCACCAGCTCGATTTCTACTAGCAAAGTTAAATCCCTCTGCGACTTACAACACCGAAAATTATCATCCTGGAGGAGATATCATCTTTACTGATGATGTTAGCTTTGAGGTTTTCCTGGATCATTTACAAAGATTAGTAGTTCAATAA 2316 0.4832 MAEFLDLESQDGVRMPWNVIPGTKQDALNAVVPVSVVYTPIKHFPSMPVLNYTPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDESLPAELFPQYTTVEYNSDASSAASSAVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGTFVHVHELGFTAVPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAIGVVAGARDGLSADSISRFLVPASECEFTINSVLEELQKDPWAVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYEGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPDATMQSTSNQLYFQFLTYYQNSNGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSAPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPVPRLVICDQHGSQHVYTCAPARFLLAKLNPSATYNTENYHPGGDIIFTDDVSFEVFLDHLQRLVVQ* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00936 771 Pfam Gelsolin repeat 636 719 IPR007123 -
Lapu10g00936 771 FunFam Protein transport protein SEC23 126 402 - -
Lapu10g00936 771 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lapu10g00936 771 Gene3D - 8 505 - -
Lapu10g00936 771 Pfam Sec23/Sec24 helical domain 522 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lapu10g00936 771 SUPERFAMILY beta-sandwich domain of Sec23/24 4 521 - -
Lapu10g00936 771 Pfam Sec23/Sec24 beta-sandwich domain 404 508 IPR012990 -
Lapu10g00936 771 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 770 IPR037364 -
Lapu10g00936 771 Gene3D Severin 624 735 IPR029006 -
Lapu10g00936 771 FunFam Protein transport protein SEC23 624 735 - -
Lapu10g00936 771 CDD Sec23_C 614 741 IPR037550 GO:0030127|GO:0090114
Lapu10g00936 771 FunFam Protein transport protein SEC23 51 110 - -
Lapu10g00936 771 FunFam Protein transport protein SEC23 391 508 - -
Lapu10g00936 771 Gene3D Sec23/Sec24 helical domain 519 769 - -
Lapu10g00936 771 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lapu10g00936 771 SUPERFAMILY vWA-like 125 393 IPR036465 -
Lapu10g00936 771 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lapu10g00936 771 Pfam Sec23/Sec24 trunk domain 125 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lapu10g00936 771 Gene3D - 51 110 - -
Lapu10g00936 771 Gene3D von Willebrand factor, type A domain 126 401 IPR036465 -
Lapu10g00936 771 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 771 IPR036180 -
Lapu10g00936 771 FunFam Protein transport protein SEC23 519 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00936 Lapu-Chr10 11127945 11140021 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00936 K14006 - gmx:100803793 1450.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00936 10 11127945 11140021 Lapu10g00936 10 11127945 11140021 ECH