Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01366 ATGGAGGAGATAAGAAAAATGGAGAAAAGGGAAGAAATAACCCCATTATTTAGTGAAAAAACAAAATCGGCTCAAAAGGCTGCTATGGAAAATCGATGGGAAGAGTTCAAGGAAAAAATGAAAGATGACCAGGAAAACTTGTTGAAATGGTTTGACCTATTTGGGAACAACGCCATCCACGTTGCAACTCGCTCCAACAACCCACAACTCCTCAAAGAACTAATACAACTGGTGCCTATAGAAGAAAGGTGGGAAGCCATGTGCATGGAGAATCGTGAAGGAAACACTGTTTTGCACGAGGTTGTGTTTTGTGAGAAGGTGCAAATGGCTAATGTTGTGTTTGAGATTGAAGAGGAGTTGGAGTTGCAATTGCCATCACAATCTGCGGATGAGGAAAAAGGGTCATTGTTAGAGGCTAGAAACCACCGAGGTGAAACTCCTTTGTTCGTGGCTGCAATGCATGGAAGGGTAACCATGCTCATGCATTTGGCCAACCGTGTAGCCACGCGTAACATGGGAGATGTTCGAAAACATTTTCGTAGATCAGACAAATGTTCTGCTCTTCATGCCACCGTCATTGGCCAACATTTTGATGTTGCAATTTGGCTTGTAAGAATGGATAAAGAACTTGCAATGCAAAAGGATGAGAGAGATTTAACATGTCTTCAACTACTTTCCAAAATGCCACAAGTTTTCCAAAGTCACACTCGCATGGGATTACTGAAGAGTCTCatatatctatTACTTCCTATTAATGAATCTGAAACTAAAGATGGTCAAAAGCTTCTTTTGTTTAAACATCAAACGGATTTAGAAAGTGGTCAAATGGATGAAAGAAATCTTTGTAAATCAGTTATTTCAAAGATCATCTACAACTTTTGGACACACTTTGCAAAAGAGTTTGAAGGGATCAATCATTTGTGGAAGGAAAAGAAAAAACATAGGCTTGTTGAATGTTTAACTAATATTTTAGTTCAATATGATTTATCATGGCAAATATCTCATAATGATAGCAAAAGGTCAATATTGATTAGAATGCCATATCATCCCTTCAATGTGGCTAAAAGGAGAAGATTAATTGCACATAAGAAGGAAGAAAGGCGCAAAAACGATGAAGATCCTCTATCTGATCGCACATCACTACTTATAGCAGCTAAAACTGGAATTGTAGAAATTGTTGAAAACTTCCTTGATGTGCATCCTGAGGCTATTTCTCATGTTAATGAGGATGGACAGAACATATTGAACATGGCCGTTAGGTATCGTCAGAAGAAAATCCTTCAAATCTTACAAAGAAAAGGTGCACTTGAATTATTGGCTCCTCAAATTACAATCAAAGGTCGTACTATATTGCACGAAATTGCAAGGATGGATTACTACAAAGCAGCACATTTAGCTGGAGTGGCATTTCAACTCCAAGATGAGTTACGTTGGTATGATAAAGTGAGAAGAATAATTCCCGAACACTACAACATGCATTGTGACATAGATGGGCACACACCAGAAGATATGTTAGAAAATGAGCATGATGGAATGCTTAAAGAGGCACAACAATGGTTAAAAGAAACAGCTCAATCATGCTCAACTGTTGCTATTCTAGTTGCTACAGTTGTATTTGCTGCAGCCTACACCATTCCTGGGGGAACTGAAAATGGTACTCCCGTATTTCTTCATTCTCATGTTTTTCTCTTTTTTACCATCATGGATGTTGTGGCTCTTGCTACCTCACTAGCTTCAGTGGTGGTGTTTCTTTCCATCCTCACTTCCCCATGCGAGTTGTGGGATTTTCACAAGTCTCTACCACGAAAACTAAACTTGGGATTTGCTTTGCTGTTCTTATCATTGTTGACAACAATGTTGGCATTTAGCGCGACCATGTTGCTAACCATTCGTTTGGAATGGAAGAATTGGACCTCAACATTGATATATAGTGCTGCTTTCTTTCCTGTCACCATATTTGCAATGATTCAATTTCCTGTTTATGTGATGACTCAAAACATTGTCAAGACACTTTGGAAGCAAATCCAGAGGGTACTTCCAAAAAGAGTGATTAAATGTTTCATGAATTGC 2070 0.3865 MEEIRKMEKREEITPLFSEKTKSAQKAAMENRWEEFKEKMKDDQENLLKWFDLFGNNAIHVATRSNNPQLLKELIQLVPIEERWEAMCMENREGNTVLHEVVFCEKVQMANVVFEIEEELELQLPSQSADEEKGSLLEARNHRGETPLFVAAMHGRVTMLMHLANRVATRNMGDVRKHFRRSDKCSALHATVIGQHFDVAIWLVRMDKELAMQKDERDLTCLQLLSKMPQVFQSHTRMGLLKSLIYLLLPINESETKDGQKLLLFKHQTDLESGQMDERNLCKSVISKIIYNFWTHFAKEFEGINHLWKEKKKHRLVECLTNILVQYDLSWQISHNDSKRSILIRMPYHPFNVAKRRRLIAHKKEERRKNDEDPLSDRTSLLIAAKTGIVEIVENFLDVHPEAISHVNEDGQNILNMAVRYRQKKILQILQRKGALELLAPQITIKGRTILHEIARMDYYKAAHLAGVAFQLQDELRWYDKVRRIIPEHYNMHCDIDGHTPEDMLENEHDGMLKEAQQWLKETAQSCSTVAILVATVVFAAAYTIPGGTENGTPVFLHSHVFLFFTIMDVVALATSLASVVVFLSILTSPCELWDFHKSLPRKLNLGFALLFLSLLTTMLAFSATMLLTIRLEWKNWTSTLIYSAAFFPVTIFAMIQFPVYVMTQNIVKTLWKQIQRVLPKRVIKCFMNC 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01366 690 Gene3D - 351 519 IPR036770 -
Cca01g01366 690 Gene3D - 1 235 IPR036770 -
Cca01g01366 690 SUPERFAMILY Ankyrin repeat 376 462 IPR036770 -
Cca01g01366 690 Pfam Domain of unknown function 518 627 IPR026961 -
Cca01g01366 690 PANTHER CASKIN 51 671 - -
Cca01g01366 690 SUPERFAMILY Ankyrin repeat 45 227 IPR036770 -
Cca01g01366 690 Coils Coil 26 46 - -
Cca01g01366 690 SMART ANK_2a 376 406 IPR002110 GO:0005515
Cca01g01366 690 SMART ANK_2a 143 172 IPR002110 GO:0005515
Cca01g01366 690 SMART ANK_2a 410 440 IPR002110 GO:0005515
Cca01g01366 690 SMART ANK_2a 93 122 IPR002110 GO:0005515
Cca01g01366 690 SMART ANK_2a 54 82 IPR002110 GO:0005515
Cca01g01366 690 SMART ANK_2a 183 212 IPR002110 GO:0005515
Cca01g01366 690 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 51 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01366 Cca-Chr1 26580999 26642484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01366 378 630 Miscellaneous Gene Families AT3G09550 25.166 6.16e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01366 - - gmx:100788731 1024.62