Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0244 ATGGCGGAATTCGTAGATCTGGAATCGCAAGACGGCGTGCGAATGCCATGGAACGTGATCCCAGGCACAAAGCAAGACTCGCTAAACGCCGTCGTTCCGATATCTGCCATATACACTCCAATCAAACACTTCCCATCAATGCCTCTCCTCCCTTACACGCCTCTCCGCTGCCGCACGTGCCGATCCATTCTGAATCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAACGCAACCACTTCCCCACTCACTATGCTTCCATCTCCGACCAGAACCTCCCCGCAGAACTCTTCCCTCAATACACTACCGTCGAATACGACACCGTTAACGACCCTTCCCCTCACGTGCCCCCCGTTTTCCTCTTCGTCGTTGACACTTGCGTCATCGAGGAGGAAATCGGCTTCCTCCGCTCCGCGCTTTCCCAAGCCGTTGAGTTGTTGCCTGAGAATTCCCTCGTTGGACTCGTTACCTTCGGGACTTTCGTGCATGTTCATGAATTAGGGTTTGGAATTGTTCCCAAGACTTATGTGTTCAAGGGCTCTAAGGATATTTCCAAAGACCAGCTTCTCGAGCAGATGAGTTTTTTCGCCAAGAAGCCCCGGCCTGCGGTCGGCGTTGTTGCCGGCGCCAGGGACGGCCTCTCCTCGGAGAGTATTTCGCGTTTTCTGGTGCCAGCGTCCGAGTGCGAGTTTACTCTCAATTCGGTTTTGGAGGAGATGCAGAGGGATCCTTGGACAGTCCCGGCGGATCAGCGGGCAACAAGGTGTACCAGCACGGCGTTGAGTATTGCTGCCAGTTTGTTGGGGGCGTGTGTGCCGGGTTCTGCTGCGAGAATAATGGCATTTATTGGGGGACCTGCGACAGAAGGACCTGCTCCGATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGATAAAGATTCTGTACTATATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTCCATCAAGGTCATGTATTAGATCTCTTTGCTTGCGCTCTTGATCAGGTTGGTATTGCTGAACTTAAAACTGCTGTTGAAAGAACTGGGGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTTAAGCGAGTTTTCCAATCAGGCGATTATGATCTGGGTCTATCGTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCCTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTAGTTATTGGGCAAGGTGGTACAAGTGCATGGAAGATGTGTGGTCTTGATAAATCCACATCATTGTGTCTATTTTTTGACATTGTGAGGAAAGAAAGTCCTGATGCTACAATGCAGTCCACAAGCAATCAATTTTACTTCCAATTCTTGACCTATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACAACTCTTTCTCGTAGATGGGTTGCTGGACCAGGAAGCATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCGCGCCAAGTCTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAAGCATTGATAAATTTGTGTTCCCGGTTTGGAGACTTCCAGAAAGATAGTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGGGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCATTGATTTCTTATTCATTCCATTCTGGTCCCGAACCAGCTCTTCTTGATGTTGCAGCCATTGCAGCTGACAGGATCCTGCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACCATTGCTCAATGGAGGAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTCGCTCAATTGCTAAAAGCTCCACATGACGATTCAGATTTAATAATGAAGGAGAGATTTCCTGTGCCTCGACTTGTTGTCTGTGATCAGTATGGCTCTCAGGCACGGTTTCTACTAGCAAAGTTAAATCCTTCTGCTACTTACAATACTGAAACTTCACATCCCGGGGGGGATATTATCTTTACGGATGATGTTAGCTTTGAGGTCTTCCTTGATCATTTACAGAGATTAGTTGTTCAATAA 2289 0.4626 MAEFVDLESQDGVRMPWNVIPGTKQDSLNAVVPISAIYTPIKHFPSMPLLPYTPLRCRTCRSILNPFCIVDFAAKIWICPFCFQRNHFPTHYASISDQNLPAELFPQYTTVEYDTVNDPSPHVPPVFLFVVDTCVIEEEIGFLRSALSQAVELLPENSLVGLVTFGTFVHVHELGFGIVPKTYVFKGSKDISKDQLLEQMSFFAKKPRPAVGVVAGARDGLSSESISRFLVPASECEFTLNSVLEEMQRDPWTVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVLYYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKESPDATMQSTSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDFQKDSPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLKAPHDDSDLIMKERFPVPRLVVCDQYGSQARFLLAKLNPSATYNTETSHPGGDIIFTDDVSFEVFLDHLQRLVVQ* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0244 762 Gene3D Severin 622 726 IPR029006 -
Apr10g0244 762 Pfam Sec23/Sec24 helical domain 520 618 IPR006900 GO:0006886|GO:0006888|GO:0030127
Apr10g0244 762 SUPERFAMILY beta-sandwich domain of Sec23/24 4 519 - -
Apr10g0244 762 CDD Sec23_C 612 732 IPR037550 GO:0030127|GO:0090114
Apr10g0244 762 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 762 IPR037364 -
Apr10g0244 762 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Apr10g0244 762 Gene3D - 8 503 - -
Apr10g0244 762 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 762 - -
Apr10g0244 762 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr10g0244 762 SUPERFAMILY vWA-like 123 391 IPR036465 -
Apr10g0244 762 SUPERFAMILY Helical domain of Sec23/24 520 622 IPR036175 GO:0006886|GO:0006888|GO:0030127
Apr10g0244 762 Pfam Gelsolin repeat 634 720 IPR007123 -
Apr10g0244 762 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Apr10g0244 762 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Apr10g0244 762 Gene3D - 51 110 - -
Apr10g0244 762 Gene3D Sec23/Sec24 helical domain 517 760 - -
Apr10g0244 762 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr10g0244 762 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 623 762 IPR036180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0244 Apr-Chr10 5789819 5818755 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0244 K14006 - gmx:100803793 1424.45