Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0255 ATGACGACGGAATTCATCGATCTCGAAACCCAAGACGGCGTACGGATGCCATGGAACGTAATCCCCGGCACAAAACAAGAATCCGTAAACGTCGTTGTTCCCGTCGCCGCCATCTACACTCCGATCAAACACTTCCCAACAATGCCAATCCTCCCATACTCCCCTCTCCGTTGCCGCACTTGTCGCTCAATCCTCAACCCTTTCTGCATCGTCGATTTCGCCGCCAAGATCTGGATCTGTCCGTTTTGCTTCCAACGCAATCATTTTCCTAATCATTACGCTTCAATCTCTGAAGATAATATGCCAGCGGAACTTTTTCCTCAATACACTACCGTTGAATATGATTCTGTTAACGATTCTGGACCGCACGTGCCGCCGGTGTTTTTGTTTGTTGTTGATACGTGTGTCATTGAGGAGGAGATTGGTTTTCTTCGATCTGCGATTTCTCAAGCTGTTGAGCTTTTGCCGGATAATTCGCTTGTTGGTTTGATTACGTTTGGGAGTTTTGTTCATGTTCATGAGTTAGGGTTTGGTATTGTTCCCAAAACTTATGTGTTTAGAGGTAATAAGGATTTGTCTAAGGAGCAGTTGTTGGAGCAGATGAGTTTTTTCGCTAAGAAACCAAAGCCGGCGGTTGGTGTTGTTGCCGGTGCGCGAGATGGACTTTCATCTGAGAGTATTTCGAGGTTTTTGCTTCCAGCTTCGGAATGTGAATTCGCCCTTAATTCGGTTTTAGATGAGTTGCAGAGGGATCCCTGGCCGGTGCCGGGTGATCAACGGGAGGCGAGGTGCACCAGCACGGCGCTGAGCATTGCGGCTAGTTTGTTGGGTGCTTGTGTTCCTGGTTCTGCCGCAAGAATAATGGCGTTTATTGGTGGACCGGCAACAGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAAGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGGCTTTCAAAGCAGCTAGTACATCAGGGTCATGTGCTAGATCTCTTTGCTTGCGCTCTTGATCAGGTTGGCATTGCTGAGCTTAAAACTGCTGTTGAAAGGACCGGGGGCCTTGTTGTACTTACTGAAAGTTTTGGCCATCCAGTGTTCAAGGATTCACTTAAGCGTGTTTTTCAATCTGGTGATTATGATCTGGGCCTCGCATCAAATGGAATATTTGAGATAAACTGCTCTAAGGACATCAAAGTCCAAGGGATTATTGGCCCTTGTGCTTCTCTTGAAAAGAAAAGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACTAGTGCATGGAAGATGTGTGGCCTTGACAAATCGACATCACTGTGCCTGTTTTTTGACATTGTGAGGAAGGAAACTCCAGACGCTACAATGCAATCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAGTGGACAAATGAGGTTTCGGGTTACAACTCTTTCACGTAGATGGGTTGCTGGACCAGGAAGCATACAGGATTTGATTTCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTGTCTTTCAAAATGGAAACGGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCCCGTTTCGGAGATTTTCAAAAAGAAACCCCATCTTCATTTAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCACTTGCGACGTTCTCAGTTTGTTCAGGTCTTCAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATTTTAAACCGGGAAAATGTTACTAACTCTGTCGTCATGGTTCAGCCTTCATTGATTTCATATTCATTCCATTCTGGTCCTGAGCCTACTCTTCTCGATGTCGCAGCCATTGCGGCTGACAGGGTTCTGCTTTTGGATGCATTTTTCACAGTCGTTATTTTTCATGGTTCAACCATTGCCCAATGGCGCAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAGTTGCTACGAGCTCCTCATGATGATTCAGATTTAATAATGAAAGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGATCCCAGGCTCGATTTCTTCTAGCAAAGTTAAATCCTTCTGCAACATATAACACCGAAGCTTCACTCCCTGGAGGGGACATTATCTTTACGGATGATGTTAGCTTTGACGTCTTCCTTGATCATTTACAGAGATTAGTTGTTCAATAG 2292 0.445 MTTEFIDLETQDGVRMPWNVIPGTKQESVNVVVPVAAIYTPIKHFPTMPILPYSPLRCRTCRSILNPFCIVDFAAKIWICPFCFQRNHFPNHYASISEDNMPAELFPQYTTVEYDSVNDSGPHVPPVFLFVVDTCVIEEEIGFLRSAISQAVELLPDNSLVGLITFGSFVHVHELGFGIVPKTYVFRGNKDLSKEQLLEQMSFFAKKPKPAVGVVAGARDGLSSESISRFLLPASECEFALNSVLDELQRDPWPVPGDQREARCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLTESFGHPVFKDSLKRVFQSGDYDLGLASNGIFEINCSKDIKVQGIIGPCASLEKKSPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKETPDATMQSTSNQFYFQFLTYYQNNSGQMRFRVTTLSRRWVAGPGSIQDLISGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDFQKETPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMVQPSLISYSFHSGPEPTLLDVAAIAADRVLLLDAFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDSDLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTEASLPGGDIIFTDDVSFDVFLDHLQRLVVQ* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0255 763 Gene3D - 9 504 - -
Mtr8g0255 763 Gene3D von Willebrand factor, type A domain 125 400 IPR036465 -
Mtr8g0255 763 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 3 763 IPR037364 -
Mtr8g0255 763 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 624 763 IPR036180 -
Mtr8g0255 763 SUPERFAMILY beta-sandwich domain of Sec23/24 5 520 - -
Mtr8g0255 763 Pfam Sec23/Sec24 beta-sandwich domain 402 507 IPR012990 -
Mtr8g0255 763 SUPERFAMILY Zn-finger domain of Sec23/24 46 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Mtr8g0255 763 CDD Sec23_C 613 733 IPR037550 GO:0030127|GO:0090114
Mtr8g0255 763 Pfam Sec23/Sec24 helical domain 521 619 IPR006900 GO:0006886|GO:0006888|GO:0030127
Mtr8g0255 763 Gene3D Severin 623 727 IPR029006 -
Mtr8g0255 763 Gene3D Sec23/Sec24 helical domain 518 761 - -
Mtr8g0255 763 SUPERFAMILY Helical domain of Sec23/24 521 623 IPR036175 GO:0006886|GO:0006888|GO:0030127
Mtr8g0255 763 Pfam Sec23/Sec24 zinc finger 55 93 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Mtr8g0255 763 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 3 763 - -
Mtr8g0255 763 Gene3D - 52 111 - -
Mtr8g0255 763 Pfam Gelsolin repeat 635 721 IPR007123 -
Mtr8g0255 763 SUPERFAMILY vWA-like 124 392 IPR036465 -
Mtr8g0255 763 Pfam Sec23/Sec24 trunk domain 124 391 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0255 Mtr-Chr8 2844023 2852621 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0255 K14006 - gmx:100803793 1419.06