Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01609 ATGACCGAATTCTTGGATCTCGAATCCCAAGACGGCGTGCGCATGCCATGGAACGTGATTCCGGGAACGAAGCAGGATGCTCTAAACGCTGTCGTTCCGGTCTCCGCTGTCTACACTCCTATAAAGCACTTTCCCTCCATGCCGGTCCTCAATTACGCGCCTCTCCGTTGCCGCACGTGTCGCTCCATTCTAAATCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGTCCCTTCTGCTTCCAGCGCAACCACTTTCCCCCGCACTACGCCTCCATCTCCGATGAATCACTCCCCGCTGAGCTCTTCCCGCAGTACACTACCGTCGAGTACAGCTCTGACTCCTCCTCCGGCGCCACCTCCGCCGTGCCTCCTGTCTTCCTCTTCGTCGTCGACACCTGCATCATCGAGGAGGAGATCGGCTTCTTGCGCTCCGCGCTCGCGCAGGCCGTCGAGCTCCTTCCCGAGAATTCGCTCGTTGGACTCATCACCTTCGGGACGTTCGTGCATGTTCACGAGTTAGGGTTCACTGCGGTGCCGAAGACTTACGTCTTCAAGGGATCGAAGGATGTCACCAAGGACCAACTCCTCGAGCAGATGAGCTTCTTCGTCAAGAAGCCCCGACCAGCAGTCGGAGTGGTCGCCGGCGCCCGCGACGGGCTCTCCACGGACAGCATTTCGCGATTCCTCGTGCCGGCGTCCGAGTGCGAGTTCACGATCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCAGTGCCGGCTGATCAGAGAGCAACTCGGAGCACCAGCACAGCTCTGAGTATAGCGGCAAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCCAGAATAATGGCATTTATTGGCGGACCGGCTACTGAAGGACCCGCTCCTATTGTATCTAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTACATCAAGGACATGTGCTAGATCTCTTCGCTTGTGCTCTTGATCAGGTAATAGCCTATTTTAGTAAGGTTGGAATTGCTGAACTTAAAACTGCTGTTGAAAGGACCGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCCCTTAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGGATATTTGAGATAAACTGCTCTAAAGATTTGAAAGTCCAGGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGTCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGTCCTGATGCAGCCATGCAGTCCGCAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAGCAGTGGGCAAATGAGATTACGGGTTACGACACTTTCACGTAGGTGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGTCAAGTCTCCTTCAAAATGGAAACTGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTATGTTCCCGATTTGGGGAATTTCAAAAAGACACACCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTCCGGCGCTCTCAGTTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAACCTTCGTTGATTTCTTATTCATTCCATTCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCAGCTGATAAGATGCTGCTTTTGGATTCCTTTTTTACTGTTGTTATTTTTCATGGTTCAACAATTGCTCAGTGGCGTAAGGCTGGCTATCATAATGAACCGGAACATCAGGCATTTGCTCATTTGCTACAAGCTCCTCATGATGATGCAGATCTAATAATGAAGGAGAGATTTCCTGTACCTCGCTTGGTCATTTGTGATCAGCATGGTTCTCAGGCTCGATTTCTACTAGCAAAGTTAAATCCTTCTGCGACTTACAACACCGAAAATTATCAACCTGGAGGAGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTGCAAAGATTAGTTGTTCAATAA 2316 0.4771 MTEFLDLESQDGVRMPWNVIPGTKQDALNAVVPVSAVYTPIKHFPSMPVLNYAPLRCRTCRSILNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDESLPAELFPQYTTVEYSSDSSSGATSAVPPVFLFVVDTCIIEEEIGFLRSALAQAVELLPENSLVGLITFGTFVHVHELGFTAVPKTYVFKGSKDVTKDQLLEQMSFFVKKPRPAVGVVAGARDGLSTDSISRFLVPASECEFTINSVLEELQKDPWAVPADQRATRSTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVIAYFSKVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPDAAMQSASNQFYFQFLTYYQNSSGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADKMLLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAHLLQAPHDDADLIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTENYQPGGDIIFTDDVSFEVFLDHLQRLVVQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01609 771 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 632 771 IPR036180 -
Spst4g01609 771 FunFam Protein transport protein SEC23 526 658 - -
Spst4g01609 771 Pfam Gelsolin repeat 643 729 IPR007123 -
Spst4g01609 771 FunFam Protein transport protein SEC23 126 409 - -
Spst4g01609 771 FunFam Protein transport protein SEC23 631 735 - -
Spst4g01609 771 FunFam Protein transport protein SEC23 51 110 - -
Spst4g01609 771 Pfam Sec23/Sec24 trunk domain 125 399 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst4g01609 771 SUPERFAMILY Zn-finger domain of Sec23/24 45 115 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst4g01609 771 Gene3D Severin 631 735 IPR029006 -
Spst4g01609 771 CDD Sec23_C 621 741 IPR037550 GO:0030127|GO:0090114
Spst4g01609 771 Gene3D von Willebrand factor, type A domain 126 408 IPR036465 -
Spst4g01609 771 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 770 IPR037364 -
Spst4g01609 771 Pfam Sec23/Sec24 beta-sandwich domain 411 515 IPR012990 -
Spst4g01609 771 SUPERFAMILY vWA-like 125 400 IPR036465 -
Spst4g01609 771 SUPERFAMILY Helical domain of Sec23/24 529 631 IPR036175 GO:0006886|GO:0006888|GO:0030127
Spst4g01609 771 Pfam Sec23/Sec24 helical domain 529 627 IPR006900 GO:0006886|GO:0006888|GO:0030127
Spst4g01609 771 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst4g01609 771 FunFam Protein transport protein SEC23 398 515 - -
Spst4g01609 771 SUPERFAMILY beta-sandwich domain of Sec23/24 4 528 - -
Spst4g01609 771 Gene3D Sec23/Sec24 helical domain 526 769 - -
Spst4g01609 771 Gene3D - 51 110 - -
Spst4g01609 771 Gene3D - 8 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01609 Spst-Chr4 55496004 55508782 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01609 K14006 - gmx:100803793 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01609 4 55496004 55508782 Spst4g01609 4 55496004 55508782 ECH