Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0681 ATGAGTGAAATGGAAGGGAGTGAAATGGAGACAACAGAAGAAATTCCATTATTTAGTGAGAAAAGGAAATTGGCTCAAAAAGCAGCCATGGCTAGTCGATGGGAAGTCttcaagaaaataatgaagaatgACAAGGAAAACTTACTCAAGTGGTTTGACTTATTTGGGAACAATGCCCTCCATGTTGCAACTCGCTCTAACAACCCAAATCTCCTCAAAGAATTAGTAGAAGTGGTGCCTATGGAAGATAGGTGGCAAGCTATGTGCAAGGAAAATCGTCAAGGAAACACTATTTTGCATGAGATTGTCTTTTGTAAAAAGGTGCAAATGGCTGATGTTGTGTTTGAGAAAGAAGATGAGTTGTTGCAACAACATGACGAGGAAAATAGGCCATTACTAGAGCATAAAAACCGCCATGGTGAAACCCCTTTGTTCATGGCTGCGATGTATGGAAAGCTAAAGATGCTCAAGCATATGGCCAACCGTATAGCCACGCATAATATGGGAGATATTCGGAAACATTTACATAGATCGGACAATTATTCCGCTCTTCACGCTAGTGTCATTGGGCAATATTTCGATGTTGCAATTTGGCTAGTAAGAATGGATAAAGAACTTGCCATGGAAAAGGATGACAAAGGATTAACATGTCTTCAACTACTTTCCAAAATGCCACAGGTTTTTCGAAGCCATACTCACATGGGAGCAATGAAGAGCCTCGTATATACTTTGCTTCCTAACGATGGATACGAAATTGAAGATGGTGAAAATCTTCGGTTGTTTAAACATCGAAGagatttagaaaatggtaaaacgGATGAAAGGAAACTTCCTGAATCAGTGATTTCAaagataaattacaaattttggaaaTGCTTAGCGACAGAGTTTGAAGGGATTGATCATATGtggaagcaaaagaaaaaacataagttAGCTGAATGTCTAGCAAATATTTTAGTGCAATATGACTTATCATGGCAGATATCTCATAATGGTTATAAAATGATAACGTTGATTACAATGCCACATCTCCCCTTCAACGTGGCCAAAAGAAGAAGGTTAAGTGAAAGTAAGAGGCAAGAGAGGCGCAAGAACGCTAAAGAATCTCTTCGCGAGAACACACCACTACTCATGGCAGCTAAAACAGGAATTGtggaaattgttgaaaaaatccTTGATGTGAATCCCTCAGCCATTTTTCATGTTACTAAGAATGGGCAAAACATATTGAACATGGCTATCCAGTACCGTCAGAAGAAAATCATTCGAATCATACAGAAAAAAGGTGCACTTGAATCATTGTTTCCTCAAATCACAGACAAAGGCCGCACTATCTTGCACGAAGTTGCAAGGATGGATTACTATAAACCAGGACGCTTAGCTGGAGTGGCATTCCAACTACAAGATGAGTTGCGTTGGTATGATAAAGTGAGAAGAATGGTGCCTGGACATTATAACATGCACTGTGACATAGATGGTCAAACAGCAGAAGATATTTTAGAAAGTGAGCATGGCGGAATGCTTACAGAGGCACAAAAATGGTTAAAGGAAACGGCTCAATCATGCTCCACGGTTGCTATTCTAGTTGCTACAGTTGTATTTGCTGCGGCCTACACTGTTCCTGGTGGAACTGAAAATGGTACCCCTATATTCCTTCATTCtcatgtttttctctttttcaccATCATGGATGTTGTGGCTCTTGCCACCTCACTAGCTTCAGTGGTGGTGTTCCTTTCCATCCTCACTTCCCCATGTGAGTTATGGGATTTTCATAAGTCTCTCCCACGAAAACTGAATTTAGGATTTGCTTTGTTATTCTTATCATTGTTGACAACAATGCTAGCATTTAGTGCAACCATGCTGCTGACCATTCGATTGGAATGGAAGAATTGGACTTCAAGTTTGATATACAGCGCTGCTTTCTTTCCTGTCACTATATTTGCAATGATTCAATTTCCTGTTTATGTGATGGCTAGACTCGCCATCAAGCAACTTTGGAAGCAACTTAAGAAGGTCCTTCCAATAAGATTGGTTAAATGTTTCGCAAATCTCAATTGA 2064 0.3784 MSEMEGSEMETTEEIPLFSEKRKLAQKAAMASRWEVFKKIMKNDKENLLKWFDLFGNNALHVATRSNNPNLLKELVEVVPMEDRWQAMCKENRQGNTILHEIVFCKKVQMADVVFEKEDELLQQHDEENRPLLEHKNRHGETPLFMAAMYGKLKMLKHMANRIATHNMGDIRKHLHRSDNYSALHASVIGQYFDVAIWLVRMDKELAMEKDDKGLTCLQLLSKMPQVFRSHTHMGAMKSLVYTLLPNDGYEIEDGENLRLFKHRRDLENGKTDERKLPESVISKINYKFWKCLATEFEGIDHMWKQKKKHKLAECLANILVQYDLSWQISHNGYKMITLITMPHLPFNVAKRRRLSESKRQERRKNAKESLRENTPLLMAAKTGIVEIVEKILDVNPSAIFHVTKNGQNILNMAIQYRQKKIIRIIQKKGALESLFPQITDKGRTILHEVARMDYYKPGRLAGVAFQLQDELRWYDKVRRMVPGHYNMHCDIDGQTAEDILESEHGGMLTEAQKWLKETAQSCSTVAILVATVVFAAAYTVPGGTENGTPIFLHSHVFLFFTIMDVVALATSLASVVVFLSILTSPCELWDFHKSLPRKLNLGFALLFLSLLTTMLAFSATMLLTIRLEWKNWTSSLIYSAAFFPVTIFAMIQFPVYVMARLAIKQLWKQLKKVLPIRLVKCFANLN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0681 687 Gene3D - 348 480 IPR036770 -
Ssu2g0681 687 SUPERFAMILY Ankyrin repeat 27 221 IPR036770 -
Ssu2g0681 687 SMART ANK_2a 372 402 IPR002110 GO:0005515
Ssu2g0681 687 SMART ANK_2a 406 436 IPR002110 GO:0005515
Ssu2g0681 687 SMART ANK_2a 94 123 IPR002110 GO:0005515
Ssu2g0681 687 SMART ANK_2a 55 83 IPR002110 GO:0005515
Ssu2g0681 687 SMART ANK_2a 179 208 IPR002110 GO:0005515
Ssu2g0681 687 SMART ANK_2a 139 168 IPR002110 GO:0005515
Ssu2g0681 687 Pfam Domain of unknown function 513 623 IPR026961 -
Ssu2g0681 687 Gene3D - 19 237 IPR036770 -
Ssu2g0681 687 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 53 667 - -
Ssu2g0681 687 SUPERFAMILY Ankyrin repeat 366 457 IPR036770 -
Ssu2g0681 687 PANTHER CASKIN 53 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0681 Ssu-Chr2 37791370 37813543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0681 375 630 Miscellaneous Gene Families AT3G12360 25.180 1.33e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0681 - - ccaj:109812492 1158.28