Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01361 ATGGCAGAATTCCTGGATCTGGAATCCCAAGACGGCGTGCGCATGCCATGGAACGTGATCCCTGGCACGCGTCAGGACTCGCTAAACGCCGTCGTTCCGGTGTCCGTGGTGTACACTCCCATAAGGCACTTCCCCTCCATGCCCGTCCTACCCTACGCTCCTCTCCGCTGCCGCACGTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCGCACTACGCCTCCATCTCCGACGACTCCCTTCCGGCCGAGCTTTTCCCGCAGTACACCACCGTCGAGTACCACTccgccgccgacgccgcccccgccgcgccgccCGTCTTCCTCTTCGTCGTCGACACCTGCGTCATCGAGGAGGAGATCGGCTTCCTCCGCTCCGCACTCTCGCAGGCCGTCGAGCTTCTCCCCGAGAAGTCGCTCGTCGGACTCATCACGTTCGGCACGTTCGTTCATGTACACGAATTAGGGTTCGGCGCGGTGCCGAAGACGTACGTCTTCAAAGGTTCCAAGGATGTTACGAAGGACCAGCTTCTCGAGCAGATGAACTTCTTCGTCAAGATGCCAAGGCCCGCTGTCGGCGTCGTTGCCGGCGTGCGCGACGGGCTCTCCATGGAGAGCATTTCGCGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTCTTAATTCGGTTTTGGAGGAGCTACAGAAGGATCCTTGGGCAGTGCCAGCAGATCAGCGGGCGACTCGGTGCACCAGCACAGCACTGAGTATTGCAGCGAGTTTGTTGGGGGCATGTGTCCCTGGATCTGCTGCGAGAATAATGGCATTTATTGGGGGACCAGCAACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGACAAAGATTCTGTGTCACATTACCATAAATGTGTGAAGTTCTATGATGGACTTTCGAAGCAGCTTGTACATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGTATTGCTGAACTTAAAACTGCTGTTGAAAGAACTGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTTAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTTTGATCTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAAGACTTGAAAGTCCAAGGTATTATTGGTCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCGGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAAATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTTGATGTTGTGAGGAAGGAAACTCCTGATGCTGCAATCCAGTCCACAAGCAATCAATTTTATTTCCAGTTCTTGACTTATTATCAGAATGACAGTGGGCAAATGAGATTAAGGGTTACAACCCTTTCACGAAGATGGGTTGCTGGACCGGAAAGTACACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCCATAGTCATGGCACGCCAAGTCTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCCCGATTTGGAGAATTTCAAAAAGACACTCCATCTTCTTTTAGTTTGTCTCCAAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGCTCTCACCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTGATGGTTCAGCCTTCGTTGATCTCTTATTCATTCCATTCTGGTCCTGAGCCAGCTCTTCTTGATGTTGCGGCCATTGCAGCTGATAGGATACTGCTTTTGGATTCATTTTTCACTGTTGTTATTTTCCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAATTGCTACGAGCTCCTCATGATGATGCAAATATAATAATGAAGGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGTTCTCAGGCTCGATTTCTACTTGCAAAGTTAAATCCTTCTGCTACATATAACACTGAAAGTTATCATCCCGGAGGGGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAA 2265 0.4728 MAEFLDLESQDGVRMPWNVIPGTRQDSLNAVVPVSVVYTPIRHFPSMPVLPYAPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDDSLPAELFPQYTTVEYHSAADAAPAAPPVFLFVVDTCVIEEEIGFLRSALSQAVELLPEKSLVGLITFGTFVHVHELGFGAVPKTYVFKGSKDVTKDQLLEQMNFFVKMPRPAVGVVAGVRDGLSMESISRFLVPASECEFTLNSVLEELQKDPWAVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVSHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDFDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDAAIQSTSNQFYFQFLTYYQNDSGQMRLRVTTLSRRWVAGPESTQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSHPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDANIIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTESYHPGGDIIFTDDVSFEVFLDHLQRLVVQ 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01361 754 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cca01g01361 754 Gene3D Sec23/Sec24 helical domain 517 752 - -
Cca01g01361 754 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 754 IPR037364 -
Cca01g01361 754 SUPERFAMILY beta-sandwich domain of Sec23/24 4 519 - -
Cca01g01361 754 Gene3D - 8 503 - -
Cca01g01361 754 CDD Sec23_C 604 724 IPR037550 GO:0030127|GO:0090114
Cca01g01361 754 Gene3D - 51 110 - -
Cca01g01361 754 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 615 754 IPR036180 -
Cca01g01361 754 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Cca01g01361 754 Pfam Sec23/Sec24 helical domain 520 610 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cca01g01361 754 Pfam Gelsolin repeat 626 712 IPR007123 -
Cca01g01361 754 SUPERFAMILY vWA-like 124 391 IPR036465 -
Cca01g01361 754 Gene3D Severin 614 718 IPR029006 -
Cca01g01361 754 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cca01g01361 754 SUPERFAMILY Helical domain of Sec23/24 520 614 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cca01g01361 754 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 754 - -
Cca01g01361 754 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Cca01g01361 754 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01361 Cca-Chr1 26371594 26387792 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01361 K14006 - gmx:100803793 1419.45