Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00701 ATGGCGGAATTTCTTGATTTGGAAGCGCAAGATGGCGTTCGAATGCCGTGGAATGTGATTCCCGGCACTAAGCAAGAAGCTACAAGCTGTGTTGTTCCCGTTTCGGCGATCTACACTCCGATCAGGCACTTCCCAGAAATGCCCATTCTCCCTTACTCTCCTCTCCGATGCCGCACGTGCCGTTCAATTCTCAATCCTTTCTGCATCGTGGACTTCGCTGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTTCCCCCTCACTATTCTTCCATCTCCGTTGAGAATCTTCCGGCGGAGCTCTTCCCCCAGTACACTACAATTGAGTATGAGACCCCCGGCGAAAAAGCTTCGATTCCTCCCGTTTTCATGTTCGTTGTTGATACATGTATAATTGAGGAGGAAATGGGTTTTTTAAAGTCTGCTTTGTCACAAGCAATTGAGCTTCTGCCGGAGAATTCCCTTGTTGGGTTGATCACGTTTGGGACTTTTGTCAATGTACATGAACTGGGTTTTGGTCAAATTCCCAAGACTTACGTGTTCAAAGGGTCCAAGGATGTGTCTAAAGAGCAGTTGCTTGAGCAGATGAGTTTCTTTGTACAGAAGCCAAAACCAAGCACTGGGGTAATTGCCGGTGCTAGAGATGGACTCTCTTCAGAGAGCATTGCTCGTTTCTTGCTGCCGGCCTCTGACTGCGAGTTCACTCTCAATTCGATTTTGGAAGAGTTACAGAAAGATCCTTGGGCTGTGCCAGCGGATCAGCGGGCGACTAGGTGCACCAGCACAGCATTGAGTATTGCAGCCAGTTTGTTGGGGGCTTGTGTTCCTGGTTCAGGGGCTAGAATAATGGCGTTTATTGGCGGACCAGCAACTGAAGGACCAGCTGCTATTGTCTCAAAATATCTATCTGAACCAATTCGCTCCCACAAAGACCTGGACAAAGATTCTGTGCCACATTACCATAAATCTGTGAAATTTTATGAAGCACTTTCGAAGCAGCTTGTACATCAAGGTCATGTGCTAGATCTCTTTGCTTGTGCTCTTGATcagGTGGGTATTGCTGAGATTAAAACTGCAGTTGAAAGGACTGGGGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTTAAGGACTCTCTTAAACGTGTCTTCCAATCGGGTGACTATGATCTAGGTTTATCATCAAATGGAATATTTGAGATAAACTGCTCAAAGGATATCAAAGTACAAGGTATTGTAGGTCCTTGCGCATCTCTTGAAAAGAAAAGTCCATTATGCTCAGATACCCTTGTTGGTCAAGGGGGTACAAGCGCATGGAAGATGTGTGGCCTTGACAAATCCACATGTTTGTGTCTGTTTTTTGACATTGTAAGGAAGGAAACTCCTGATGCTACTGCTCAGTCCACAAGCAATCAATTTTACTTCCAATTCATGACCTATTATCAGAGTAGCAGTGGGCAAATGAGATTTCGGGTTACAACTCTTTCAAGGAGATGGGTCGCTGGTCCAGGAAGCATACAGGACTTGGTTGCTGGGTTTGATCAAGAAGCTGCTGCTATAGTCATGGCACGCCAAGTTTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAagcattaataaatttatgttctcGGTTTGGAGATTACCAGAAAGAAACACCATCATCTTTCAGTTTGTCTCCCAGGCTGTCAATATTCCCACAGTTCATGTTTCATTTACGACGTTCACAGTTTGTTCAGGTTTTTAACAACAGTCCTGATGAAACTGCATACTTTCGAATGATACTGAACCGCGAAAATGTAGCCAATTCTGTTGTCATGATTCAGCCATCATTgatttcttattcatttcatTCGGGTCCTGAACCAGCACTTCTTGATGTGGCTGCGATTGCTGCGGACAGAATCTTGCTTTTGGATTCGTTTTTCACCGTTGTTATTTTTCATGGTTCAACTATTGCCCAGTGGAGAAAAGCTGGATATCACAATCAACCTGAGCATCAGGCCTTTGCACAGTTACTACGAGCCCCTCATGATGATGCAGATTCGATAATAAAGGAAAGGTTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCACGGCTCACAGGCTCGATTTCTGCTGGCAAAATTAAATCCCTCTGCAACATACAATTCAGAAGCTTCTGTTCCAGGAGGAGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCTTGGATCATCTTCAGAGATTAGTAGTTCAATG 2285 0.4411 MAEFLDLEAQDGVRMPWNVIPGTKQEATSCVVPVSAIYTPIRHFPEMPILPYSPLRCRTCRSILNPFCIVDFAAKIWICPFCFQRNHFPPHYSSISVENLPAELFPQYTTIEYETPGEKASIPPVFMFVVDTCIIEEEMGFLKSALSQAIELLPENSLVGLITFGTFVNVHELGFGQIPKTYVFKGSKDVSKEQLLEQMSFFVQKPKPSTGVIAGARDGLSSESIARFLLPASDCEFTLNSILEELQKDPWAVPADQRATRCTSTALSIAASLLGACVPGSGARIMAFIGGPATEGPAAIVSKYLSEPIRSHKDLDKDSVPHYHKSVKFYEALSKQLVHQGHVLDLFACALDQVGIAEIKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDIKVQGIVGPCASLEKKSPLCSDTLVGQGGTSAWKMCGLDKSTCLCLFFDIVRKETPDATAQSTSNQFYFQFMTYYQSSSGQMRFRVTTLSRRWVAGPGSIQDLVAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDYQKETPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNQPEHQAFAQLLRAPHDDADSIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSEASVPGGDIIFTDDVSFEVFLDHLQRLVVQ 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00701 761 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 761 - -
Bva02g00701 761 SUPERFAMILY Helical domain of Sec23/24 519 621 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bva02g00701 761 SUPERFAMILY vWA-like 122 390 IPR036465 -
Bva02g00701 761 SUPERFAMILY beta-sandwich domain of Sec23/24 4 518 - -
Bva02g00701 761 Gene3D - 8 502 - -
Bva02g00701 761 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva02g00701 761 Pfam Sec23/Sec24 trunk domain 123 389 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bva02g00701 761 SUPERFAMILY Zn-finger domain of Sec23/24 45 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva02g00701 761 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 761 IPR037364 -
Bva02g00701 761 Pfam Sec23/Sec24 helical domain 519 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bva02g00701 761 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 622 761 IPR036180 -
Bva02g00701 761 Gene3D Severin 621 725 IPR029006 -
Bva02g00701 761 Pfam Sec23/Sec24 beta-sandwich domain 401 505 IPR012990 -
Bva02g00701 761 Gene3D von Willebrand factor, type A domain 123 398 IPR036465 -
Bva02g00701 761 Gene3D - 51 110 - -
Bva02g00701 761 Gene3D Sec23/Sec24 helical domain 516 759 - -
Bva02g00701 761 CDD Sec23_C 611 731 IPR037550 GO:0030127|GO:0090114
Bva02g00701 761 Pfam Gelsolin repeat 633 719 IPR007123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00701 Bva-Chr2 10287408 10305197 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00701 K14006 - gmx:100803793 1384.01