Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0862 ATGGCCGAATTCTTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCCTGGAACGTGATCCCAGGAACCAAGCAAGACGCCCTAAACTGCGTCGTTCCGGTCTCCGTTGTCTACACTCCCATAAAGCAATTCCCCTCCATGCCAGTCCTCAATTACACGCCTCTTCGATGCCGCACGTGCCGCTCCGTTCTCAATCCCTTCTGCATCGTCGACTTTGCCGCCAAGATCTGGATCTGTCCCTTCTGCTTCCAGCGCAACCACTTTCCCCCTCACTACGCCTCAATATCTGACGAATCCCTCCCGGCCGAGCTTTTCCCGCAGTACACCACCGTCGAGTATAACTCCGACGCTTCGTCCGCTGCCTCCGCCGCCGTACCTCCCGTTTTCCTCTTCGTCGTTGACACCTGCGTCATCGAGGAGGAGATTGGATTCCTGCGCTCCGCGCTCGCGCAGGCCGTCGAGCTCCTCCCCGAGAATTCCCTTGTTGGGCTCATCACCTTCGGGACGTTCGTGCATGTTCACGAGTTAGGGTTTGGTGCGTTGCCGAAGACGTACGTCTTCAAGGGATCGAAGGATGTCACCAAGGACCAGCTCCTCGAACAGATGAGCTTCTTCGCCAAGAAGCCCCGCCCGGCCGTTGGTGTGGTTGCCGGGGCGCGCGACGGGCTGTCCGCGGACAGCATTTCGCGGTTCCTCGTACCGGCGTCCGAGTGCGAGTTCACAATCAATTCGGTTTTGGAGGAGCTGCAGAAAGATCCTTGGGCAGTGCCCACTGATCAGAGAGCAACTCGGTGTACCAGCACAGCTCTGAGTATCGCAGCAAGTTTGTTAGGGGCATGTGTCCCTGGTTCTGCCGCGAGAATAATGGCATTTATTGGTGGACCGGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGATCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGCGTGAAATTCTATGATGGACTTGCGAAGCAGCTTGTACATCAAGGACATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTAGGAATTGCTGAACTTAAAACTGCTGTTGAAAGGACTGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGTCATTCGGTATTCAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCCTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAATCCAGGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGACTCGACAAATCCACATCATTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGTCCTGATGCAGCCATTCAGGCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAGCAAAGGGCAGATGAGATTACGGGTTACGACACTGTCAAGGAGATGGATTGCTGGACCCGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCCATAGTCATGGCTCGTCAAGTCTCCTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATGTGTGTTCCCGATTTGGGGAATTTCAAAAGGACACACCATCTTCTTTCAGTTTGTCTCCCAGGCTGTCAATATTCCCACAATTTATGTTTCATTTCCGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCATTGATTTCTTATTCATTCCATTCTGGTCCGGAACCAGCACTTCTTGATGTTGCTGCCATTGCGGCTGATAAGATCCTCCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACAATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTTCTACGAGCTCCTCATGATGATGCAGATTTAATAATAAAGGAGAGGTTTCCAGTACCTCGCCTGGTCATTTGTGATCAGCATGGCTCTCAGGCTCGATTTTTACTGGCAAAGTTAAATCCTTCTGCGACTTACAGCACCGAAAATTATAATCCTGGAGGAGATATTATCTTCACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAAAGATTAGTAGTTCAATAA 2295 0.4776 MAEFLDLESQDGVRMPWNVIPGTKQDALNCVVPVSVVYTPIKQFPSMPVLNYTPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDESLPAELFPQYTTVEYNSDASSAASAAVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGTFVHVHELGFGALPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSADSISRFLVPASECEFTINSVLEELQKDPWAVPTDQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLAKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKIQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPDAAIQATSNQFYFQFLTYYQNSKGQMRLRVTTLSRRWIAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINVCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQFLRAPHDDADLIIKERFPVPRLVICDQHGSQARFLLAKLNPSATYSTENYNPGGDIIFTDDVSFEVFLDHLQRLVVQ* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0862 764 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vra9g0862 764 SUPERFAMILY beta-sandwich domain of Sec23/24 4 521 - -
Vra9g0862 764 Gene3D Severin 624 728 IPR029006 -
Vra9g0862 764 Gene3D von Willebrand factor, type A domain 126 401 IPR036465 -
Vra9g0862 764 SUPERFAMILY vWA-like 125 393 IPR036465 -
Vra9g0862 764 Gene3D - 8 505 - -
Vra9g0862 764 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vra9g0862 764 Pfam Sec23/Sec24 beta-sandwich domain 404 507 IPR012990 -
Vra9g0862 764 Pfam Gelsolin repeat 636 722 IPR007123 -
Vra9g0862 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 IPR037364 -
Vra9g0862 764 CDD Sec23_C 614 734 IPR037550 GO:0030127|GO:0090114
Vra9g0862 764 Pfam Sec23/Sec24 helical domain 522 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vra9g0862 764 Gene3D - 51 110 - -
Vra9g0862 764 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 764 IPR036180 -
Vra9g0862 764 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vra9g0862 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 - -
Vra9g0862 764 Pfam Sec23/Sec24 trunk domain 125 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vra9g0862 764 Gene3D Sec23/Sec24 helical domain 519 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0862 Vra-Chr9 10168533 10182050 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0862 K14006 - gmx:100803793 1451.42