Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00277 ATGGCGGAATTCATCGATCTCGAAACCCAAGACGGCGTTCGAATGCCATGGAACGTAATTCCCGGCACAAAACAAGAATCAACAAACGTCGTCGTTCCCGTTTCCGCAATCTACACTCCAATCAAACACTTCCCTTCCATGCCACTCCTCCCTTACTCACCTCTCCGTTGTCGCACTTGCCGTTCAATTCTCAATCCATTCTGCATCGTCGATTTCGCCGCCAAGATCTGGATCTGTCCATTCTGTTTCCAACGTAACCACTTTCCACCGCATTACGCTTCAATCTCCGATGCTAATCTACCGGCGGAGCTTTTTTCACAATATACAACTGTCGAATATGATTCTCCAGGTGATAATTCACCGCACGTGCCTCCTGTTTATCTTTTCGTTGTTGATACGTGTGTTATTGAAGAAGAAATAGGTTTTCTTCGATCGGCGATTTCGCAAGCTGTTGAGCTTTTGCCTGATAATTCTCTTGTTGGACTTATTACTTTTGGAACTTTTGTTCATGTTCATGAGCTTGGATTTGGTATTGTTCCAAAAACTTATGTGTTTAGAGGATCTAAAGATGTTTCTAAGGATCAGTTGTTGGAACAGATGAGTTTTTTTGCTAAGAAACCGAAGCCGGCGGTTGGTGTTGTTGCTGGTGCAAGGGATGGACTTTCGTCCGAGAGTATTTCGAGGTTTTTGCTTCCGGCGTCCGAGTGTGAATTCGCGCTTAATTCGGTTTTAGATGAGCTGCAGAGGGATCCGTGGCCAGTGCCAGGTGATCAGCGGGAGGCGAGGTGCACTAGCACGGCATTGAGTATTGCGGCTAGTTTGTTGGGGGCTTGTGTTCCTGGTTCTGCCGCAAGAATAATGGCATTTATTGGGGGACCGGCAACCGAAGGACCTGCTTCTATTGTATCCAGACAACTTTCGGAACCAATTCGCTCCCACAAAGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGGCTTTCGAAGCAGCTTGTACATCAAGGTCATGTGTTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGCATTGCTGAGCTTAAAACTGCTGTTGAAAGGACGGGGGGCCTTGTTGTACTTACCGAAAGTTTTGGCCATCCAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTATGATCTGGGCCTAGCATCGAATGGAATATTTGAGGTAAACTGCTCCAAGGACATCAAAGTCCAAGGGATTATTGGCCCTTGTGCTTCTCTTGAAAAGAAAAGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACTAGTGCATGGAAGATGTGTGGCCTTGACAAATCGACATCACTCTGTTTGTTTTTTGACATTGTGAGGAAGGAAACTCCTGACGCTACAATGCAATCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAGTGGCCAAATGAGATTTCGGGTTACAACCCTTTCACGTAGATGGGTTGCTGGACCAGGAAGCATACAGGACTTGATTTCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTGTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGATAAGGCATTGATAAATTTGTGTTCCCGGTTCGGAGATTTTCAAAAAGACACCCCATCTTCATTTAGTTTGTCTCCCAGGTTGTCAATATTCCCACAGTTTATGTTTCACTTGCGACGTTCTCAGTTTGTTCAGGTCTTCAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATTCTAAACCGGGAAAATGTTACCAATTCTGTTGTCATGGTTCAGCCTTCATTGATTTCGTATTCGTTCCATTCTGGTCCTGAGCCTGCTCTTCTCGATGTCGCAGCCATTGCGGCTGACAGGGTTCTGCTTTTGGATTCGTTTTTCACAGTCGTTATTTTTCATGGTTCAACCATTGCCCAATGGCGCAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAGTTGCTACGAGCTCCTCATGATGATTCAGATTTAATAATGAAAGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGATCTCAGGCTCGATTTCTACTAGCAAAGTTAAATCCTTCTGCAACATATAACACTGAAGCTTCGCTCCCTGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTGAGGTCTTTCTGGATCATTTACAGAGATTAGTAGTTCAATAG 2289 0.4417 MAEFIDLETQDGVRMPWNVIPGTKQESTNVVVPVSAIYTPIKHFPSMPLLPYSPLRCRTCRSILNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDANLPAELFSQYTTVEYDSPGDNSPHVPPVYLFVVDTCVIEEEIGFLRSAISQAVELLPDNSLVGLITFGTFVHVHELGFGIVPKTYVFRGSKDVSKDQLLEQMSFFAKKPKPAVGVVAGARDGLSSESISRFLLPASECEFALNSVLDELQRDPWPVPGDQREARCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPASIVSRQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLTESFGHPVFKDSLKRVFQSGDYDLGLASNGIFEVNCSKDIKVQGIIGPCASLEKKSPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKETPDATMQSTSNQFYFQFLTYYQNNSGQMRFRVTTLSRRWVAGPGSIQDLISGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMVQPSLISYSFHSGPEPALLDVAAIAADRVLLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDSDLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTEASLPGGDIIFTDDVSFEVFLDHLQRLVVQ 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00277 762 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 623 762 IPR036180 -
Trre15g00277 762 Gene3D - 8 503 - -
Trre15g00277 762 Gene3D - 51 110 - -
Trre15g00277 762 CDD Sec23_C 612 732 IPR037550 GO:0030127|GO:0090114
Trre15g00277 762 SUPERFAMILY Zn-finger domain of Sec23/24 45 117 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre15g00277 762 Gene3D Severin 622 726 IPR029006 -
Trre15g00277 762 Pfam Sec23/Sec24 beta-sandwich domain 401 506 IPR012990 -
Trre15g00277 762 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 761 IPR037364 -
Trre15g00277 762 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Trre15g00277 762 Pfam Gelsolin repeat 634 720 IPR007123 -
Trre15g00277 762 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Trre15g00277 762 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre15g00277 762 SUPERFAMILY Helical domain of Sec23/24 520 622 IPR036175 GO:0006886|GO:0006888|GO:0030127
Trre15g00277 762 FunFam Protein transport protein SEC23 622 726 - -
Trre15g00277 762 FunFam Protein transport protein SEC23 51 110 - -
Trre15g00277 762 Gene3D Sec23/Sec24 helical domain 517 760 - -
Trre15g00277 762 SUPERFAMILY beta-sandwich domain of Sec23/24 4 519 - -
Trre15g00277 762 FunFam Protein transport protein SEC23 517 653 - -
Trre15g00277 762 FunFam Protein transport protein SEC23 389 506 - -
Trre15g00277 762 FunFam Protein transport protein SEC23 124 400 - -
Trre15g00277 762 SUPERFAMILY vWA-like 123 391 IPR036465 -
Trre15g00277 762 Pfam Sec23/Sec24 helical domain 520 618 IPR006900 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00277 Trre-Chr15 1907119 1915607 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00277 K14006 - gmx:100791527 1430.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00277 15 1907119 1915607 Trre15g00277 15 1907119 1915607 ECH