Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0677 ATGGGCTCTCCGTGGAGAGCATTTCGAGGTTCCTGGTGCCGGCGTTGGAGTGCGAGTTCACTCTCAATTCGGTTTTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCAGCAGATCAGCGGGCAGCTCGCTGCACCAGCACTGGCTCTGAGTATTGCAGCAAGTTTGTTGGGGGCATGTGTCCCTGGTTCTGCTGCGAGGATAATGGCGTTTATTGGGGGACCGGCAACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAGGATCTGGATAAAGATTCTGTGCCTTATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTACATCAAGGTCATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGTATTGCTGAACTTAAAACTGCTGTTGAAAGGACTGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTTAAGCGTGTATTCCAATCGGGTGATTATGATCTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGCCTATTTTTCGATGTTGTGAGGAAGGAAAGTCCTGATGCTGCAATGCAGTCCACAAGCAATCAGTTTTACTTCCAATTCTTGACATATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACAACCCTTTCACGTAGATGGGTTGCTGGACCAGAAAATATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGTCAAGTCTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATGTGTGTTCCCGGTTTGGGGAATTTCAAAAAGACTCTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGgTCTTTAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATACTGAACCGCGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCATTGATTTCTTATTCATTCCATTCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCGGCTGATAGGATCCTGCTTTTGGATTCATTTTTCactgttgttatttttcatggTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAATTGCTACGAGCTCCTCACGATGATGcagatttaataataaaggagAGATTTCCTGTACCTCGCGTGGTTGTTTGTGATCAGCATGGCTCTCAGGCTCGATTTCTACTAGCAAAGTTAAATCCCTCTGCTACTTATAACACTGAAACTTATCATCCCGGAGGGGATATTATCTTTACCGATGATGTTAGCTTTGAGGTCTTCCTTGATCATTTACAGAGATTAGtagttcaataa 1635 0.4257 MGSPWRAFRGSWCRRWSASSLSIRFWRSCRRILGRCQQISGQLAAPALALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPYYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPDAAMQSTSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPENIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINVCSRFGEFQKDSPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPVPRVVVCDQHGSQARFLLAKLNPSATYNTETYHPGGDIIFTDDVSFEVFLDHLQRLVVQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0677 544 Gene3D Severin 404 508 IPR029006 -
Ssu2g0677 544 Gene3D Sec23/Sec24 helical domain 299 542 - -
Ssu2g0677 544 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 47 544 IPR037364 -
Ssu2g0677 544 CDD Sec23_C 394 514 IPR037550 GO:0030127|GO:0090114
Ssu2g0677 544 Pfam Gelsolin repeat 416 502 IPR007123 -
Ssu2g0677 544 SUPERFAMILY beta-sandwich domain of Sec23/24 190 301 - -
Ssu2g0677 544 SUPERFAMILY Helical domain of Sec23/24 302 404 IPR036175 GO:0006886|GO:0006888|GO:0030127
Ssu2g0677 544 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 47 544 - -
Ssu2g0677 544 Pfam Sec23/Sec24 trunk domain 47 172 IPR006896 GO:0006886|GO:0006888|GO:0030127
Ssu2g0677 544 Gene3D von Willebrand factor, type A domain 37 177 IPR036465 -
Ssu2g0677 544 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 405 544 IPR036180 -
Ssu2g0677 544 Gene3D - 178 288 - -
Ssu2g0677 544 SUPERFAMILY vWA-like 43 173 IPR036465 -
Ssu2g0677 544 Pfam Sec23/Sec24 helical domain 302 400 IPR006900 GO:0006886|GO:0006888|GO:0030127
Ssu2g0677 544 Pfam Sec23/Sec24 beta-sandwich domain 184 288 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0677 Ssu-Chr2 37584972 37605750 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0677 K14006 - gmx:100803793 948.347