Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01493 ATGGTTCTGATTGTCATGTGTTTGCTTTATATATTGACTCATTTCTTATTTAACTTTATTTTTTGCAGTGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAATCCAGGGCATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTGTGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTCGACAAATCCACATCATTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGTCCTGATGCAGCCATTCAGGCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAAAGGGCAGATGAGATTACGGGTTACGACACTGTCACGTAGATGGATTGCTGGACCCGAAAGTGTCCAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCGATAGTCATGGCTCGTCAAGTCTCTTTCAAAATGGAAACAGAGCTTTTCTGCTGTTGTAGCTGTTTCACTCTTCCAGCTTTTCTGATTCTCCTGTTGTCTGCTCCTCCCACAGGCCTTTCCTCTTACTGTTTCCTCAGGTCTTTCTCTCAAACTGAGTTTGTGCTAATGATTGGAGAAGCAGAGAAACCATTACCACGTATTTCTGTTCACTTTGCAGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATGTGTGTTCCCGATTTGGGGAATTTCAAAAGGACACACCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTCCGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCATTGATTTCTTATTCATTCCATTCTGGTCCGGAACCAGCACTTCTTGATGTTGCTGCCATTGCGGCTGATAAGATCCTCCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACAATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTTCTACGAGCTCCTCATGATGATGCAGATTTAATAATAAAGGAGAGGTTTCCTGTACCTCGTCTGGTCATTTGTGATCAGCATGGCTCTCAGGTTACTTTCTATTATTTTTTGCCATTGGCTCGATTTTTACTGGCAAAGTTAAATCCTTCTGCGACTTACAGCACCGAAAATTATAATCCTGGAGGAGATATTATCTTCACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAAAGATTAGTAGTTCAATAA 1353 0.4065 MVLIVMCLLYILTHFLFNFIFCSGIFEINCSKDLKIQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPDAAIQATSNQFYFQFLTYYQNNKGQMRLRVTTLSRRWIAGPESVQDLIAGFDQEAAAIVMARQVSFKMETELFCCCSCFTLPAFLILLLSAPPTGLSSYCFLRSFSQTEFVLMIGEAEKPLPRISVHFAAEFDPIRWLDKALINVCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQFLRAPHDDADLIIKERFPVPRLVICDQHGSQVTFYYFLPLARFLLAKLNPSATYSTENYNPGGDIIFTDDVSFEVFLDHLQRLVVQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01493 450 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 219 449 IPR037364 -
Vimu9g01493 450 Pfam Gelsolin repeat 313 398 IPR007123 -
Vimu9g01493 450 FunFam Protein transport protein SEC23 301 414 - -
Vimu9g01493 450 Pfam Sec23/Sec24 beta-sandwich domain 24 126 IPR012990 -
Vimu9g01493 450 SUPERFAMILY beta-sandwich domain of Sec23/24 25 140 - -
Vimu9g01493 450 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 302 450 IPR036180 -
Vimu9g01493 450 Pfam Sec23/Sec24 helical domain 224 297 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu9g01493 450 FunFam Protein transport protein SEC23 5 127 - -
Vimu9g01493 450 Gene3D Severin 306 434 IPR029006 -
Vimu9g01493 450 CDD Sec23_C 291 420 IPR037550 GO:0030127|GO:0090114
Vimu9g01493 450 Gene3D Sec23/Sec24 helical domain 130 305 - -
Vimu9g01493 450 SUPERFAMILY Helical domain of Sec23/24 219 301 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu9g01493 450 Gene3D - 16 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01493 Vimu-Chr9 24084864 24101287 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01493 K14006 - ncol:116265680 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01493 9 24084864 24101287 Vimu9g01493 9 24084864 24101287 ECH