Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0342 ATGGCCGAATTCTTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCCTGGAACGTGATCCCAGGCACCAAGCAGGACGCCCTAAACGCCGTCGTTCCGGTCTCCGTTGTCTACACTCCTATAAAGCACTTCCCCTCCATGCCAGTCCTCAATTACACGCCTCTCCGCTGCCGCACGTGCCGTTCAGTCCTCAATCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGTCCGTTCTGCTTCCAGCGCAACCACTTCCCTCCGCACTACGCCTCAATATCTGATGAATCCCTCCCCGCTGAGCTCTTCCCGCAGTACACGACCGTCGAGTACAACTCCGACGCCTCCTCCTCCGCCGACGCCGCCGTGCCTCCCGTGTTCCTCTTCGTCGTCGATACCTGCATCATCGAGGAGGAGATCGGCTTCCTGCGCTCCGCGCTGGCGCAGGCCGTCGAGCTCCTCCCCGAGAATTCGCTTGTCGGACTCATCACCTTCGGGACGTTAGTGCATGTTCACGAGTTAGGGTTTGCTGCGCTGCCGAAGACGTACGTCTTCAAGGGATCGAAGGATGTCACCAAGGACCAGCTCCTCGAACAAATGAGCTTCTTCGCCAAGAAGCCACGCCCGGCCGTCGGTGTGGTCGCCGGCGCGCGCGACGGGCTCTCCTCCGACAGTATTTCGCGGTTCCTCGTGCCGGCGTCTGAGTGCGAGTTCACAATCAATTCGGTTTTGGAGGAGCTGCAGAAAGATCCTTGGGCAGTGCCCGCAGATCAGAGAGCAACTCGGTGTACCAGCACGGCTCTGAGTATTGCAGCAAGTTTGTTAGGGGCATGTGTCCCTGGTTCAGCCGCAAGAATAATGGCTTTTATTGGTGGACCTGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGATCCCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTACATCAAGGACATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTAGGAATTGCCGAACTTAAAACTGCTGTTGAAAGGACCGGAGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAGTCGGGTGATTATGATCTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAATCCAGGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCAACATCGCTGTGCCTATTTTTTGATGTTGTGAGGAAGGAAAGTCCTGAGGCAGCCATGCAGGCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAGTGGGCAGATGAGATTACGGGTTACGACACTTTCACGTAGATGGATTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGTCAAGTCTCTTACAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATCTGTGTTCCCGATTTGGGGAATTTCAAAAGGACGCACCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTCCGACGTTCTCAGTTTGTTCAGGTGTTTAACAACAGCCCAGACGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTGCTAATTCTGTTGTCATGGTTCAGCCTTCGTTGATCTCTTATTCATTCCATTCTGGTCCGGAACCAGCACTTCTTGATGTTGCTGCCATTGCGGCTGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTTATTTTTCATGGTTCAACAATAGCTCAATGGCGTAAGGCTGGATATCATAATGAACCGGAGCATCAGGCATTTGCTCAATTGCTACGAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTACCTCGCCTGGTCATTTGTGATCAGCACGGCTCTCAGGCTCGATTTCTACTAGCAAAGTTAAATCCTTCTGCGACTTACAACACCGAAAATTATAATCCTGGAGGTGATATTATCTTTACTGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTGCAAAGATTAGTAGTTCAATAA 2295 0.4815 MAEFLDLESQDGVRMPWNVIPGTKQDALNAVVPVSVVYTPIKHFPSMPVLNYTPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDESLPAELFPQYTTVEYNSDASSSADAAVPPVFLFVVDTCIIEEEIGFLRSALAQAVELLPENSLVGLITFGTLVHVHELGFAALPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSSDSISRFLVPASECEFTINSVLEELQKDPWAVPADQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKIQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKESPEAAMQATSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWIAGPESIQDLIAGFDQEAAAIVMARQVSYKMETEAEFDPIRWLDKALINLCSRFGEFQKDAPSSFSLSPRLSIFPQFMFHFRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHSGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDSDLIIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTENYNPGGDIIFTDDVSFEVFLDHLQRLVVQ* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0342 764 Pfam Gelsolin repeat 636 722 IPR007123 -
Pvu10g0342 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 IPR037364 -
Pvu10g0342 764 Gene3D - 51 110 - -
Pvu10g0342 764 Gene3D Sec23/Sec24 helical domain 519 762 - -
Pvu10g0342 764 Gene3D Severin 624 728 IPR029006 -
Pvu10g0342 764 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pvu10g0342 764 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 764 IPR036180 -
Pvu10g0342 764 SUPERFAMILY beta-sandwich domain of Sec23/24 4 521 - -
Pvu10g0342 764 Pfam Sec23/Sec24 helical domain 522 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pvu10g0342 764 Pfam Sec23/Sec24 beta-sandwich domain 404 507 IPR012990 -
Pvu10g0342 764 Pfam Sec23/Sec24 trunk domain 125 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pvu10g0342 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 - -
Pvu10g0342 764 Gene3D von Willebrand factor, type A domain 126 401 IPR036465 -
Pvu10g0342 764 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pvu10g0342 764 Gene3D - 8 505 - -
Pvu10g0342 764 CDD Sec23_C 614 734 IPR037550 GO:0030127|GO:0090114
Pvu10g0342 764 SUPERFAMILY vWA-like 125 393 IPR036465 -
Pvu10g0342 764 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0342 Pvu-Chr10 4790248 4803162 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0342 K14006 - gmx:100803793 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0342 10 4790248 4803162 Pvu10g0342 10 4790248 4803162 ECH