Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10354 ATGGCTAATCGATGGGAACAATTCAAGAAAATAATGAAGGAATTAGAAGACAAGAAAAACTTGCTTGAGTGGTTTGATCTGTTTGGGAACACAGCCATCCATGTTGCAACTCGCTCTAACAATCCACAAATCCTAAGAGAATTGTTAGAAACTTTACATGAAGAAGAAAGGTGGAGGGCTTTGTGGAAGGAGAATCGTGAAGGGAACACTGTTTTACATGAGGTGGCGTTTTGCAAAAAGGTAAACATGGCAAATGTTGTGTTTGAGTTTGAAGAGAATCTAAGGCCAGAGGAGGAAGAAATTAGGAAAGGGTTGCCATTACTATTGGAGTGCAAAAACCACAAAGGTGAAACCCCTTTGTTTAGGGCTGCAAAGTATGGGAAGCTCAAGATGCTCAAACATATGGCAAATCATATGGCCATAAATAATAAGGGAGACATTTGTAAACATTTGCATAGAGATGTTGCACTTTGGTTAGTGAGAATGGACAGAAGACTAGCTATGGAAAAGGATCAGAACGGATTTACATGTCTTCAACTACTTTCCAAAATGCCACATGTTTTCCGTAGCCATTGTCCCATGGGAGCAGTGAAGAGCCTCATATACCATTTGCTTCCTGATGAAGGATATGAAATTGAAGAGGGTGAAAGCCTTCACTTGTTTAAACATAAGAGAGATTTAGAAAATGGTAAAATGGACGAAAGGGAACTCCCCAAATCAGCTAGCTACCTTCTTATTTCTTATTTCTTGATGATAAATCTAACTTATGGACCAATATTGATTGCAGAGTTTGATGGTATTGATCATCTGTGGCAGCAAAAGAAGAAGCACAGATTAGCAGAGTGTCTAGCAGATATTTTAGTTCAATATGACTTATCATGGCAGACATCTTTTAATGACTATAAAAAGACACTGATCGCAATGCCACCACTTCCCTTCAATGTGGCCAAAAGGAGAAAGCAAATTGAGTCCAAGAGGCAAGAGGAGCGTGAGAGCCATGACGAATCCCTCACATATAATTACACACCACTGCTCTTAGCAGCTAGCACTGGAATTGTAGAAATTGTTGAAAAAATCCTTTATGTGAATCCTGAGGCCATTAATCATGTTAGCAAGGATGAACAAAACATACTTCACATGGCCATCGAGCATCGCCAGAAGGAAATATTTCGTATCATAAAGAGAAAAAAAGCAATTAAATCATTGGTTTCTAGGATCACAAAGGAAGGCCGCACAATCTTGCACCAAGTTGCAAGGATGGATTATTACAAAGGAGGACACTTAGCAGGAGTGGCATTTCAGTTGCAAGATGAGTTGCGTTGGTATGATAAATGGCTAAAGGAAACAGCTCAATCATGTTCCACTGTTGCTGTTCTTGTTGCCACAGTTGTGTTTGCTGCTGCTTACACCATTCCTGGTGGAAGTGAAGGAGGCACCCCAGTGTTCCTTCGTTCTCCTATTTTTCTCTTTTTCACCATTATGGATGTTGTGGGTCTTGCCACCTCACTAGCTTCAGTGGTGATGTTCCTTTCTATCCTCACTTCCCCATGTGAATTGTGGGATTTTCATAAGTCTCTCCCTCGAAAACTGAATTGGGGGTTTGCGTTATTGTTCTTCTCTTTGATGACAACAATGCTCGCATTTAGTGCAACCATTTTGCTGACCATTCGATTGGAGTGGAAGAATTGGACTTCAACTTTGATATACGGTGCTGCCTTCTTTCCTGTCACTGTATTTGCGATAATTCAATTTCCTGTTTATGTGATGGCTGAAAGCATTGTTAAGCAAATTCGCAAGCATATTCTGAAGGAAGACCTCAAAGCTAACATCATCCGTAAAGATAATATCTCCTCCAGGATGAGAAGTTTCGGTGTTATAAGTTGCAGAAGGATTTAA 1896 0.4014 MANRWEQFKKIMKELEDKKNLLEWFDLFGNTAIHVATRSNNPQILRELLETLHEEERWRALWKENREGNTVLHEVAFCKKVNMANVVFEFEENLRPEEEEIRKGLPLLLECKNHKGETPLFRAAKYGKLKMLKHMANHMAINNKGDICKHLHRDVALWLVRMDRRLAMEKDQNGFTCLQLLSKMPHVFRSHCPMGAVKSLIYHLLPDEGYEIEEGESLHLFKHKRDLENGKMDERELPKSASYLLISYFLMINLTYGPILIAEFDGIDHLWQQKKKHRLAECLADILVQYDLSWQTSFNDYKKTLIAMPPLPFNVAKRRKQIESKRQEERESHDESLTYNYTPLLLAASTGIVEIVEKILYVNPEAINHVSKDEQNILHMAIEHRQKEIFRIIKRKKAIKSLVSRITKEGRTILHQVARMDYYKGGHLAGVAFQLQDELRWYDKWLKETAQSCSTVAVLVATVVFAAAYTIPGGSEGGTPVFLRSPIFLFFTIMDVVGLATSLASVVMFLSILTSPCELWDFHKSLPRKLNWGFALLFFSLMTTMLAFSATILLTIRLEWKNWTSTLIYGAAFFPVTVFAIIQFPVYVMAESIVKQIRKHILKEDLKANIIRKDNISSRMRSFGVISCRRI. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10354 631 Gene3D - 313 437 IPR036770 -
Seca4g10354 631 Gene3D - 1 201 IPR036770 -
Seca4g10354 631 SUPERFAMILY Ankyrin repeat 10 186 IPR036770 -
Seca4g10354 631 SUPERFAMILY Ankyrin repeat 339 422 IPR036770 -
Seca4g10354 631 PANTHER CASKIN 30 593 - -
Seca4g10354 631 Pfam Domain of unknown function 444 553 IPR026961 -
Seca4g10354 631 SMART ANK_2a 28 57 IPR002110 GO:0005515
Seca4g10354 631 SMART ANK_2a 67 96 IPR002110 GO:0005515
Seca4g10354 631 SMART ANK_2a 339 369 IPR002110 GO:0005515
Seca4g10354 631 SMART ANK_2a 373 402 IPR002110 GO:0005515
Seca4g10354 631 SMART ANK_2a 115 144 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10354 Seca-Chr4 239083254 239091786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10354 339 557 Miscellaneous Gene Families AT3G09550 25.847 2.02e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10354 - - gmx:100788731 746.117