Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0809 ATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTTCGAATGCCGTGGAACGTGATCCCCGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCATCTCCGCCGTCTACACTCCGATAAAGCACTTCCCCTCGATGCCGGTCCTCAACTACTCCCCTCTCCGGTGCCGCACGTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACTCCTCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCGCAGTACACCACCGTCGAGTACAACTCCGACGCCGCCGTGGGCCCCACTTATAATAACCCCTCCGTACCCCCTGTTTTCCTCTTTGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCCGCGCTCGCGCAGGCGGTTGAGCTTTTGCCCGAGAACTCGCTCGTTGGACTCATTACGTTTGGAACGTTTGTTCATGTTCACGAATTAGGGTTTGGTGCGGTGCCGAAGACTTATGTTTTCAAGGGATCTAAGGATTTGACGAAGGACCAGCTGCTCGAGCAGATGAGTTTTTTCGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTGGCTGGCGCGAGGGACGGGCTCTCCCCGGAAAGTATTTCGAGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTATCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGTGCTGCTCGGTGCACCAGCACGGCACTGAGTATCGCGGCGGGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCGAGAATAATGGCATTTATTGGAGGACCGGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACTGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTATTTTCCAATCGGGTGATTATGATTTGGGCCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTACTATTGGTCAAGGGGGTACAAGTGCATGGAAAATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTTGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATCCAGTCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACGGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCTGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGGCCGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTAAACCGTGAAAATGTTGCGAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTCTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCAGCCATTGCGGCTGATAAGATCCTGCTTTTGGATTCATTTTTCACAGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAATTGCTACGAGCTCCTCATGATGATGCTGATTTAATTATAAAGGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTACAATCCCGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTGATGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAA 2304 0.4822 MAEFLDLESQDGVRMPWNVIPGTKQDAQNAVVPISAVYTPIKHFPSMPVLNYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYSSISDDSLPAELFPQYTTVEYNSDAAVGPTYNNPSVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGTFVHVHELGFGAVPKTYVFKGSKDLTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSPESISRFLVPASECEFTINSVLEELQKDPWAVPADQRAARCTSTALSIAAGLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRIFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVTIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATIQSTSNQFYFQFLTYYQNNGGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTESYNPGGDIIFTDDVSFDVFLDHLQRLVVQ* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0809 767 Pfam Sec23/Sec24 helical domain 525 623 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso3g0809 767 SUPERFAMILY Helical domain of Sec23/24 525 627 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso3g0809 767 Gene3D - 51 110 - -
Gso3g0809 767 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 767 IPR037364 -
Gso3g0809 767 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g0809 767 SUPERFAMILY Zn-finger domain of Sec23/24 45 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g0809 767 Pfam Sec23/Sec24 beta-sandwich domain 407 511 IPR012990 -
Gso3g0809 767 Pfam Sec23/Sec24 trunk domain 128 395 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso3g0809 767 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 767 - -
Gso3g0809 767 SUPERFAMILY vWA-like 128 396 IPR036465 -
Gso3g0809 767 Gene3D - 8 508 - -
Gso3g0809 767 CDD Sec23_C 617 737 IPR037550 GO:0030127|GO:0090114
Gso3g0809 767 SUPERFAMILY beta-sandwich domain of Sec23/24 4 524 - -
Gso3g0809 767 Gene3D Severin 627 731 IPR029006 -
Gso3g0809 767 Gene3D Sec23/Sec24 helical domain 522 765 - -
Gso3g0809 767 Gene3D von Willebrand factor, type A domain 129 404 IPR036465 -
Gso3g0809 767 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 628 767 IPR036180 -
Gso3g0809 767 Pfam Gelsolin repeat 639 725 IPR007123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0809 Gso-Chr3 28956449 28968836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0809 K14006 - gmx:100803793 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0659 16 9151506 9176454 Gso3g0809 3 28956449 28968836 GST