Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00327 ATGGCGGAATTCATGGATCTCGAATCCCAAGACGGTGTTCGCATGCCATGGAACGTGATCCCTGGAACAAAACAAGAAGCCATAAACGCCGTTGTTCCAGTAGCAGCGATCTACACTCCAATAAAACACTTCCCTTCAATGCCCATTCTCCCTTACTCCCCACTCCGTTGCCGCACGTGCCGTTCCGTTCTCAACCCTTTCTGCATCGTCGATTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAACGTAACCATTTCCCCCCTCACTACGCTTCAATCTCCGATGATAACCTCCCCGCTGAGCTATTCCCGCAATACACAACAGTTGAATATGATTCACCTGCCGAAACCGCACCGCACGTGCCGCCGGTTTTTCTGTTTGTTATTGACACGTGTGTAATTGAGGAGGAGATTGGCTACCTTCGATCCGCGGTCACGCAGGCGGTTGAGCTCTTGCCGGAGAATTCACTTGTTGGACTCATTACCTTTGGTACATTTGTGCATGTTCATGAGTTAGGGTTTGGTATTGTTCCGAAAACCTATGTGTTCAAGGGATCTAAGGAGGTTTCGAAGGATCAGTTGCTTGAGCAGATGAGTTTCTTCATGAAGAAGCCGAAGCCGGCGGTTGGTGTGGTTGCCGGAGCGAGGGATGGGCTGTCGGCGGAGAGTATTTCACGGTTTCTTCTTCCGGCGTCCGAGTGCGAGTTCACACTCAATTCGGTTTTGGATGAGTTGCAGAAGGATCCTTGGCCGGTGCCGGGTGATCAGAGGGCGACTCGATGTACCAGTACGGCGCTGAGTATTGCGGCGAGTTTGTTAGGGGCATGTGTTCCTGGTTCTGCTGCGAGAATAATGGCATTTATTGGGGGACCTGCAACTGAAGGACCTGCTCCTATTGTATCCAAACTACTTTCTGAACCAATTCGTTCACACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCAAAGCAGCTTGTACATCAAGGTCATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGCATTGCTGAACTTAAAACTGCTGTTGAAAGGACTGGGGGCCTTGTTGTACTTGCAGAAAGTTTTGGCCACTCAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTATGATCTAGGCCTATCATCAAATGGAATATTTGAGATAAACTGCTCCAAGGACATTCGAGTCCAAGGTATTATTGGCCCATGTGCGTCTCTTGAAAAGAAAGGGCCATTATGTTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCAACATCATTGTGTCTGTTTTTTGACATTGTGAGGAAGGAAAGTCCTGATGCTACAGTGCAGTCGATGAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACAATGGGCAAATGAGACTTCGTGTTACAACCCTTTCACGTAGATGGGTTGCCGGACCAGGAAGCATACAAGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCCATAGTCATGGCACGCCAAGTGTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGATAAGGCATTGATAAATTTGTGTTCCCGGTTTGGAGATTTTCAAAAAGACACTCCATCTTCTTTTAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGATCTCAATTTGTTCAGGTCTTTAACAACAGCCCTGATGAGACCGCTTACTTTAGAATGATTCTGAACCGAGAAAATTTATTTTTCATGGTTCAAGCCCAGTGGCGAAAAGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAGTTGCTACGAGCTCCTCACGATGATGCAGATTTAATAATTAAAGAGAGATTTCCTGGACCCCGCCTGGTTGTTTGTGATCAGTATGGCTCCCAGGCTCGATTTCTTCTAGCAAAGTTAAACCCTTCTGCAACTTATAACACAGAATCTTCCCTTTCTGGAGGGGATATTATCTTCACGGATGATGTTAGCTTTGAGGTCTTCCTGGATCATTTACAGAGATTAGTTGTTCAATAA 2148 0.4548 MAEFMDLESQDGVRMPWNVIPGTKQEAINAVVPVAAIYTPIKHFPSMPILPYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTVEYDSPAETAPHVPPVFLFVIDTCVIEEEIGYLRSAVTQAVELLPENSLVGLITFGTFVHVHELGFGIVPKTYVFKGSKEVSKDQLLEQMSFFMKKPKPAVGVVAGARDGLSAESISRFLLPASECEFTLNSVLDELQKDPWPVPGDQRATRCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKLLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDIRVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDIVRKESPDATVQSMSNQFYFQFLTYYQNNNGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGDFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENLFFMVQAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPGPRLVVCDQYGSQARFLLAKLNPSATYNTESSLSGGDIIFTDDVSFEVFLDHLQRLVVQ* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00327 715 FunFam Protein transport protein SEC23 124 400 - -
Rops4g00327 715 Gene3D Severin 620 679 IPR029006 -
Rops4g00327 715 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops4g00327 715 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Rops4g00327 715 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 619 715 IPR036180 -
Rops4g00327 715 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Rops4g00327 715 Pfam Sec23/Sec24 helical domain 520 613 IPR006900 GO:0006886|GO:0006888|GO:0030127
Rops4g00327 715 FunFam Protein transport protein SEC23 51 110 - -
Rops4g00327 715 Gene3D Sec23/Sec24 helical domain 680 713 - -
Rops4g00327 715 Gene3D - 8 503 - -
Rops4g00327 715 SUPERFAMILY Helical domain of Sec23/24 520 615 IPR036175 GO:0006886|GO:0006888|GO:0030127
Rops4g00327 715 Gene3D Sec23/Sec24 helical domain 510 618 - -
Rops4g00327 715 Pfam Gelsolin repeat 620 673 IPR007123 -
Rops4g00327 715 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 614 IPR037364 -
Rops4g00327 715 SUPERFAMILY Zn-finger domain of Sec23/24 45 117 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops4g00327 715 SUPERFAMILY beta-sandwich domain of Sec23/24 4 519 - -
Rops4g00327 715 SUPERFAMILY vWA-like 123 391 IPR036465 -
Rops4g00327 715 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Rops4g00327 715 Gene3D - 51 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00327 Rops-Chr4 9813346 9829761 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00327 K14006 - gmx:100791527 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00327 4 9813346 9829761 Rops4g00327 4 9813346 9829761 ECH