Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0771 . . . . . . . . . . . . . . . . . . Apr7g1641 . . . . . . . Bva08g01338 Bva11g01149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0772 . . . . . . Aed6g0301 . . . . . . . . . . . Apr7g1640 . . . . . . . Bva08g01337 . . . Cca06g00824 . . . . . . . . . Gma02g00317 Gma01g00281 . . Gso2g0298 Gso2g0298 . . . . . . Lal16g0537 . . . . . . . Lapu2g01589 . . . . . . . . . . . Lja2g0970 . Mal6g0129 . Mepo5g01579 . Mesa17g01771 . . . Mtr5g1402 . . . Phco4g01439 . . . Psa2g2385 . Pste1g01948 . . . . . Pumo8g01225 . Pvu2g0732 . Rops1g00851 . Seca10g01479 . Spst2g01413 . Ssu2g1781 . Sto11g1125 . Tpr2g1725 . Trre9g02189 . Tsu05g01464 . Vian10g01175 . Vifa1g04638 . Vimu7g03698 . Viun2g01243 . Vivi2g01334 . . .
Vvi1g0773 . . . . . . . Aed7g1632 . Aev03g0568 . Ahy13g3680 . Aip03g04124 . . . . . Apr3g0789 . Arst3g04914 . Bach2g02135 . Bisa02g1298 Bva08g01334 Bva11g01147 . . . Cca11g00686 . Dere14g0583 . Dod04g0068 . . . Glsi13g1294 . . Gma08g02684 Gma18g01257 . . . . . . . . . . . . . . . . . Lapu9g00728 . Lasa5g02205 . . . . . . . . . Lja4g2802 . Mal5g2832 . Mepo3g05849 . Mesa9g03314 . . . Mtr8g2000 . Phac9g02962 . Phco7g02130 . . . . . Pste2g00797 . . . Pte1g01954 . Pumo10g02029 . Pvu9g1840 . Rops10g00657 . Seca4g03068 . Spst9g02199 . Ssu5g1085 Sto11g1124 Sto6g4323 . Tpr4g4751 . Trre5g02696 . Tsu04g02856 . Vian4g00854 . Vifa2g02027 . Vimu10g01238 . Viun9g01216 . Vivi3g03904 . .
Vvi1g0774 . . . . . Adu03g03757 . Aed7g1633 . . . . . . . . . . . Apr3g0790 . . . Bach10g00928 . . . Bva11g01146 . . . Cca11g00685 . . . . . . . . . . Gma08g02685 Gma18g01256 . . . . . . . . . . . . . . . . . . . Lasa4g01776 . . . . . . . . . Lja4g2803 . . . Mepo1g02604 . Mesa29g02799 . . . . . . . Phco8g02749 . . . . . Pste7g00648 . . . . . . . Pvu3g0631 . . . Seca12g03657 . Spst3g02569 . Ssu5g1084 . Sto6g4324 . . . Trre15g02038 . . . . . Vifa4g01820 . Vimu11g03219 . Viun3g03244 . . . .
Vvi1g0775 . . . . . Adu03g03759 . Aed7g1635 . Aev03g0567 . Ahy13g3682 . Aip03g04125 . . . . . . . . . . . . Bva08g01333 . . . . Cca11g00683 . . . Dod04g0067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo1g02605 . Mesa29g02801 . . . Mtr8g1999 . . . Phco8g02750 . . . . . Pste7g00650 . . Pte14g00601 Pte12g00762 . . . Pvu3g0630 . . . Seca12g03658 . Spst3g02568 . Ssu5g1082 . . . . . Trre15g02040 . . . . . Vifa4g01818 . . . Viun3g03245 . . . .
Vvi1g0776 . . . . . . . . . . . . . . . . . . . Apr3g0791 . . . . . . . . . . . . . . . . . . . . . . Gma08g02686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g4325 . . . . . . . . . . . . . . . . . .
Vvi1g0777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0778 . . . . . . . . . Aev03g0566 . Ahy13g3683 . Aip03g04126 . . . . . . . . . . . . . . . . . . . . . Dod04g0066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0780 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 78 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0771 Chr1 7835696 7837297 +
Apr Apr7g1641 Chr7 23556107 23558889 -
Bva Bva08g01338 Chr08 6988281 6990458 -
Bva Bva11g01149 Chr11 12572211 12572450 -
Vvi Vvi1g0772 Chr1 7842080 7854134 -
Aed Aed6g0301 Chr6 2645420 2649723 -
Apr Apr7g1640 Chr7 23548976 23554693 +
Bva Bva08g01337 Chr08 6981857 6987444 +
Cca Cca06g00824 Chr06 21253397 21259516 +
Gma Gma02g00317 Chr02 3304471 3311247 +
Gma Gma01g00281 Chr01 3199080 3204187 -
Gso Gso2g0298 Chr2 3205762 3210111 +
Gso Gso2g0298 Chr2 3205762 3210111 +
Lal Lal16g0537 Chr16 3448676 3454436 -
Lapu Lapu2g01589 Chr2 29438029 29442475 +
Lja Lja2g0970 Chr2 9119354 9123609 -
Mal Mal6g0129 Chr6 1842716 1846907 -
Mepo Mepo5g01579 Chr5 16735587 16741640 -
Mesa Mesa17g01771 Chr17 25105706 25113684 -
Mtr Mtr5g1402 Chr5 14693943 14700127 -
Phco Phco4g01439 Chr4 12614921 12619598 -
Psa Psa2g2385 Chr2 273944944 273949775 +
Pste Pste1g01948 Chr1 6065122 6067465 -
Pumo Pumo8g01225 Chr8 43854656 43855319 +
Pvu Pvu2g0732 Chr2 9685440 9690151 -
Rops Rops1g00851 Chr1 20809691 20816858 -
Seca Seca10g01479 Chr10 15936329 15938275 -
Spst Spst2g01413 Chr2 12870526 12875101 -
Ssu Ssu2g1781 Chr2 68529999 68534778 +
Sto Sto11g1125 Chr11 11285328 11290412 +
Tpr Tpr2g1725 Chr2 20407356 20413120 -
Trre Trre9g02189 Chr9 23513129 23518956 -
Tsu Tsu05g01464 Chr05 13930106 13935602 -
Vian Vian10g01175 Chr10 19319417 19325934 +
Vifa Vifa1g04638 Chr1 726328436 726333109 -
Vimu Vimu7g03698 Chr7 32289773 32295191 -
Viun Viun2g01243 Chr2 23003379 23009667 +
Vivi Vivi2g01334 Chr2 56785839 56790878 -
Vvi Vvi1g0773 Chr1 7861008 7870867 +
Aed Aed7g1632 Chr7 19579659 19589535 +
Aev Aev03g0568 Chr03 4175752 4179229 -
Ahy Ahy13g3680 Chr13 135501108 135505603 +
Aip Aip03g04124 Chr03 125016459 125021020 +
Apr Apr3g0789 Chr3 20707380 20715165 +
Arst Arst3g04914 Chr3 124891122 124895910 +
Bach Bach2g02135 Chr2 28471470 28482662 -
Bisa Bisa02g1298 Chr02 22060836 22065151 +
Bva Bva08g01334 Chr08 6967290 6971188 -
Bva Bva11g01147 Chr11 12564598 12568804 -
Cca Cca11g00686 Chr11 11484103 11497568 -
Dere Dere14g0583 Chr14 6125831 6142161 -
Dod Dod04g0068 Chr04 767820 773434 -
Glsi Glsi13g1294 Chr13 30350241 30377021 -
Gma Gma08g02684 Chr08 42060898 42069002 +
Gma Gma18g01257 Chr18 20724009 20732061 -
Lapu Lapu9g00728 Chr9 9415427 9433775 +
Lasa Lasa5g02205 Chr5 461371331 461381903 +
Lja Lja4g2802 Chr4 46666260 46676624 +
Mal Mal5g2832 Chr5 84171463 84176884 +
Mepo Mepo3g05849 Chr3 72775148 72786842 +
Mesa Mesa9g03314 Chr9 63886099 63897311 +
Mtr Mtr8g2000 Chr8 29778684 29784620 -
Phac Phac9g02962 Chr9 28724435 28752449 +
Phco Phco7g02130 Chr7 37636768 37653040 +
Pste Pste2g00797 Chr2 8466835 8480657 +
Pte Pte1g01954 Chr1 40842679 40853931 -
Pumo Pumo10g02029 Chr10 26971912 26987289 +
Pvu Pvu9g1840 Chr9 26060303 26077217 +
Rops Rops10g00657 Chr10 16201549 16225231 -
Seca Seca4g03068 Chr4 52605664 52619269 +
Spst Spst9g02199 Chr9 49211069 49226299 +
Ssu Ssu5g1085 Chr5 34455701 34463286 -
Sto Sto11g1124 Chr11 11278570 11284058 -
Sto Sto6g4323 Chr6 45939125 45942747 +
Tpr Tpr4g4751 Chr4 56066288 56071404 +
Trre Trre5g02696 Chr5 21356329 21366940 -
Tsu Tsu04g02856 Chr04 34457392 34462534 -
Vian Vian4g00854 Chr4 11649122 11672194 -
Vifa Vifa2g02027 Chr2 527698206 527709584 +
Vimu Vimu10g01238 Chr10 12380581 12398896 -
Viun Viun9g01216 Chr9 11460518 11482977 -
Vivi Vivi3g03904 Chr3 67605959 67621800 -
Vvi Vvi1g0774 Chr1 7871487 7873977 -
Adu Adu03g03757 Chr03 126131049 126133685 -
Aed Aed7g1633 Chr7 19586515 19590230 -
Apr Apr3g0790 Chr3 20715107 20718473 -
Bach Bach10g00928 Chr10 6581327 6583912 -
Bva Bva11g01146 Chr11 12562068 12565426 +
Cca Cca11g00685 Chr11 11480805 11483858 +
Gma Gma08g02685 Chr08 42070299 42073947 -
Gma Gma18g01256 Chr18 20719727 20723197 +
Lasa Lasa4g01776 Chr4 353869415 353872009 +
Lja Lja4g2803 Chr4 46681524 46684158 -
Mepo Mepo1g02604 Chr1 27454647 27457616 -
Mesa Mesa29g02799 Chr29 38601163 38603368 -
Phco Phco8g02749 Chr8 40552359 40555146 -
Pste Pste7g00648 Chr7 5959536 5962316 -
Pvu Pvu3g0631 Chr3 8270199 8273452 +
Seca Seca12g03657 Chr12 93403988 93407213 -
Spst Spst3g02569 Chr3 73911392 73914170 +
Ssu Ssu5g1084 Chr5 34452752 34455041 +
Sto Sto6g4324 Chr6 45943452 45945538 -
Trre Trre15g02038 Chr15 16516582 16518613 -
Vifa Vifa4g01820 Chr4 516301853 516303969 +
Vimu Vimu11g03219 Chr11 52010552 52012556 +
Viun Viun3g03244 Chr3 39253096 39256458 -
Vvi Vvi1g0775 Chr1 7894093 7896340 -
Adu Adu03g03759 Chr03 126143267 126145534 -
Aed Aed7g1635 Chr7 19617037 19620940 -
Aev Aev03g0567 Chr03 4173240 4175070 +
Ahy Ahy13g3682 Chr13 135509666 135512069 -
Aip Aip03g04125 Chr03 125021307 125027688 -
Bva Bva08g01333 Chr08 6963668 6966315 +
Cca Cca11g00683 Chr11 11460911 11463931 +
Dod Dod04g0067 Chr04 764676 767591 +
Mepo Mepo1g02605 Chr1 27460069 27462874 -
Mesa Mesa29g02801 Chr29 38619809 38622334 -
Mtr Mtr8g1999 Chr8 29776098 29778240 +
Phco Phco8g02750 Chr8 40570477 40573663 -
Pste Pste7g00650 Chr7 5971835 5975303 -
Pte Pte14g00601 Chr14 26862836 26865694 +
Pte Pte12g00762 Chr12 8427136 8429168 -
Pvu Pvu3g0630 Chr3 8253476 8256522 +
Seca Seca12g03658 Chr12 93430427 93433729 -
Spst Spst3g02568 Chr3 73893257 73895721 +
Ssu Ssu5g1082 Chr5 34375172 34377839 +
Trre Trre15g02040 Chr15 16525737 16529063 -
Vifa Vifa4g01818 Chr4 515972945 515975329 +
Viun Viun3g03245 Chr3 39260355 39263353 -
Vvi Vvi1g0776 Chr1 7926321 7926791 -
Apr Apr3g0791 Chr3 20726415 20729258 -
Gma Gma08g02686 Chr08 42074766 42079038 -
Lja Lja4g2804 Chr4 46699452 46702668 +
Sto Sto6g4325 Chr6 45946718 45948965 -
Vvi Vvi1g0777 Chr1 7928117 7929398 -
Vvi Vvi1g0778 Chr1 7930689 7932870 -
Aev Aev03g0566 Chr03 4163436 4171267 +
Ahy Ahy13g3683 Chr13 135520777 135522955 -
Aip Aip03g04126 Chr03 125035820 125038119 -
Dod Dod04g0066 Chr04 755102 759197 +
Vvi Vvi1g0779 Chr1 7939985 7941785 +
Vvi Vvi1g0780 Chr1 7942103 7942980 +
Arst Arst3g04914 Chr3 124891122 124895910 +
Bach Bach2g02135 Chr2 28471470 28482662 -
Bisa Bisa02g1298 Chr02 22060836 22065151 +
Dere Dere14g0583 Chr14 6125831 6142161 -
Glsi Glsi13g1294 Chr13 30350241 30377021 -
Lapu Lapu9g00728 Chr9 9415427 9433775 +
Lasa Lasa5g02205 Chr5 461371331 461381903 +
Mepo Mepo3g05849 Chr3 72775148 72786842 +
Mesa Mesa9g03314 Chr9 63886099 63897311 +
Phac Phac9g02962 Chr9 28724435 28752449 +
Phco Phco7g02130 Chr7 37636768 37653040 +
Pste Pste2g00797 Chr2 8466835 8480657 +
Pte Pte1g01954 Chr1 40842679 40853931 -
Pumo Pumo10g02029 Chr10 26971912 26987289 +
Pvu Pvu9g1840 Chr9 26060303 26077217 +
Rops Rops10g00657 Chr10 16201549 16225231 -
Seca Seca4g03068 Chr4 52605664 52619269 +
Spst Spst9g02199 Chr9 49211069 49226299 +
Trre Trre5g02696 Chr5 21356329 21366940 -
Vian Vian4g00854 Chr4 11649122 11672194 -
Vifa Vifa2g02027 Chr2 527698206 527709584 +
Vifa Vifa2g02027 Chr2 527698206 527709584 +
Vimu Vimu10g01238 Chr10 12380581 12398896 -
Viun Viun9g01216 Chr9 11460518 11482977 -
Vivi Vivi3g03904 Chr3 67605959 67621800 -