Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02040 ATGGCAGATTCTGTCACTACTCACGATGTTCTCTCCATTCTCTCTTCTCCCGGTACACATTTTCTTCTCAAAAACAACGCCGATCAGGTTACAATTGATAGTTTGAAGGGGAAGAAAATTGGTTTCTATTTTTCGGCTTCATGGTGTGGTCCGTGTCAAAGATTCACTCCAACATTAGCAGAGGTGTACAATGAACTCTCTCCAAATGGTGACTTTGAGGTTGTTTTTGTCTCTGCTGATGAAGATGATGAGGCTTTTAAGAGTTACTTTTCCAAGATGCCGTGGTTGGCTATACCATTTTCTGATTCAGAGACACGCAATAGCCTTGATGAATTGTTTCATGTAAATGGCATTCCTCATCTTGCATTGCTTGATGAAACTGGGAAAGTTGTTACTGAAGATGGAGTTGACATTATCCGTGACTATGGAGCTGAAGGATACCCTTTCACATCGGAAAGGGTCAAAGAGTTGAAAGATCAAGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAGATCTCTATTGGTATCTCGTTCCCGTGACTTCGTGATATCAGCCGATGGAAATAAAGTACCTATTTCTGAGCTTGAGGGAAAGACAGTTGGTCTGTATTTCTGTGCGACTTCATACAGATCATGTGTGTTATTTACTCAACAGCTTAAGGATGTTTACAAGAAGCTGAAGGAAAAAGGGGAGAACTTCGAGGTTGTGTTTATGCCTTTAGATGATGAGGAAGAGTCATTGAAGAAAGAGTTAGAAGGTTTGCCTTGGTTATCCTTGCCTGTCAAGGACAAAACCTGTGCGAAACTGATTCAATACTTTGAGCTATCAGATCTCCCTACCTTAGTTATTATTGGGCCAGATGGGAAAACTCTTCATCCTAATGTCGCTGAGGCCGTTCAGGATCATGGGATTGATGCATATCCGTTCACTCCTGAAAAGTTTGTTGAACTTGATGAAATAGCAAAGGCCAAGGAAGCAACTCAAACTCTTGAGTCAGTTTTGGTGTCTGGGGATCAAGACTTTGTCATTAAGAATGGTGGGGAGAAGATTCCGGTGTCAGCATTAGAGGGGAAGACTGTCCTCCTCTACTTCTCAGCTCACTGGTGTCCTCCATGCCGAGCGTTTCTTCCAAAACTCATTGATGCATACCATAAGATTAAGGCACAAGACAAAGATGGACTTGAAGTCGTTTTCATCTCAAGTGACAGAGATCAAGACTCCTTTAATGAATTCTTTGCGGGAATGCCATGGCTGGCACTTCCCTTTGGTGATTCAAGGAAAGAATTCCTGAGTCGCAAATTCAAGATATCTGGAATCCCCATGCTCGTTGCAATTGGACCAAGTGGTCGGACTGTCACAAAAGAAGCTCGAGATCTGGTTGGGCTATATGGGGCAGATGCTTATCCTTTCACCGAGGAGAAAATAAAAGAAATAGAGGCAAAGAATGATGACATTGCAAAGGGGTGGCCTGAGAAGGTGACACATGAAACACATGAGCATGAGCTTGTATTATCGCGCCGCAGGATTTATTATTGTGATGATTGCAATGCAGAGGGACATAATTGGTCATACTTCTGTGAAGACTGTGACTTTGATCTCCATCCAAATTGTGCATTGGGAGACAAAGGAAGCATAAATGGTACCAAGGAAGAAGAGAAGCCGAAAGATGGATGGGTTTGTGACGGAGATGTCTGCACCAAAGCCTGA 1707 0.4294 MADSVTTHDVLSILSSPGTHFLLKNNADQVTIDSLKGKKIGFYFSASWCGPCQRFTPTLAEVYNELSPNGDFEVVFVSADEDDEAFKSYFSKMPWLAIPFSDSETRNSLDELFHVNGIPHLALLDETGKVVTEDGVDIIRDYGAEGYPFTSERVKELKDQEEEAKRNQSLRSLLVSRSRDFVISADGNKVPISELEGKTVGLYFCATSYRSCVLFTQQLKDVYKKLKEKGENFEVVFMPLDDEEESLKKELEGLPWLSLPVKDKTCAKLIQYFELSDLPTLVIIGPDGKTLHPNVAEAVQDHGIDAYPFTPEKFVELDEIAKAKEATQTLESVLVSGDQDFVIKNGGEKIPVSALEGKTVLLYFSAHWCPPCRAFLPKLIDAYHKIKAQDKDGLEVVFISSDRDQDSFNEFFAGMPWLALPFGDSRKEFLSRKFKISGIPMLVAIGPSGRTVTKEARDLVGLYGADAYPFTEEKIKEIEAKNDDIAKGWPEKVTHETHEHELVLSRRRIYYCDDCNAEGHNWSYFCEDCDFDLHPNCALGDKGSINGTKEEEKPKDGWVCDGDVCTKA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02040 568 SUPERFAMILY Thioredoxin-like 342 454 IPR036249 -
Trre15g02040 568 ProSitePatterns Thioredoxin family active site. 361 379 IPR017937 -
Trre15g02040 568 Gene3D Glutaredoxin 173 310 - -
Trre15g02040 568 Gene3D Glutaredoxin 15 151 - -
Trre15g02040 568 Gene3D Glutaredoxin 316 471 - -
Trre15g02040 568 ProSiteProfiles Thioredoxin domain profile. 12 159 IPR013766 -
Trre15g02040 568 PANTHER THIOREDOXIN 5 299 - -
Trre15g02040 568 SUPERFAMILY Thioredoxin-like 183 292 IPR036249 -
Trre15g02040 568 CDD TryX_like_TryX_NRX 21 149 IPR045870 GO:0004791
Trre15g02040 568 ProSiteProfiles Thioredoxin domain profile. 317 480 IPR013766 -
Trre15g02040 568 Pfam Thioredoxin-like 357 450 IPR012336 -
Trre15g02040 568 Pfam Thioredoxin-like 197 289 IPR012336 -
Trre15g02040 568 Pfam Thioredoxin-like 37 130 IPR012336 -
Trre15g02040 568 CDD TryX_like_TryX_NRX 340 470 IPR045870 GO:0004791
Trre15g02040 568 SUPERFAMILY Thioredoxin-like 22 131 IPR036249 -
Trre15g02040 568 SUPERFAMILY Cysteine-rich domain 489 541 IPR046349 -
Trre15g02040 568 Pfam C1 domain 497 538 IPR004146 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02040 Trre-Chr15 16525737 16529063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02040 K17609 - gmx:100809224 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02040 15 16525737 16529063 Trre15g02040 15 16525737 16529063 ECH