Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1294 ATGGCTGGCTTAGTAGAAGATCAAGTTCTTGGAATTGACGGTATAAAGGACCCGGAGACTGAGGAGAGGAGCAAACGCACGCAGAATACTGTGGTCAAGGAGGAGGGTATGGCACCTACTGCCGGCAGTTCAATTCACCGGTCGAGTTCAAGGCCGCAGCTTGATGTCAGCAAAGCTGAAATTCAAGGAAATGTGGAGGAGAAGTATCCCACAATTTTGCTTCCCAACCAGTCTGATGATATATCCCATCTGGCTCTGGACATTGGAGGATCTCTGATAAAGTTGGTGTACTTTTCAAGACATGAAGACCAATCAGTCAATGATAAAAGGAAGAGAAGTATGAAGGAGCGACTGGGAATTTCTAATGGTAACAGGAGAAACTTTCCTATTCTTGGTGGCAGGCTTCATTTTGTGAAGTTTGAGACAAGCAAGATTAACGAGTGCTTAGACTTCATCTATTCAAAGCAGCTTCACTGTGGTGGGTTGGAATCACATTACTCTGATACTGTGGCTGACCGAAATGTCATAATTAAGGCTACTGGTGGTGGATCCTACAAGTTTGCTGACCTTTTCAAAGAAAGACTTGGGGTTAGTCTGGACAAAGAAGACGAAATGGATTGTCTTGTAGCAGGAGCAAATTTTTTGCTTAAGGCAATTCGTCATGAAGCTTTCACGCATATAGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCCCATGATTTGTTTCCTTATCTTCTAGTTAATATTGGATCAGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAATTTTGAGAGGGTTAGTGGGACAAATGTTGGGGGTGGTACTTATTGGGGCTTGGGAAGACTCTTAACGATGTGCAAGAGTTTTGATGATTTGCTTGAGCTGAGTCAGAAAGGGGATAATAGAACCACTGACATGCTTGTTGGGGACATCTATGGTGGTATGGACTACTCCAAGATTGGCCTATCAGCTTCAACCATTGCTTCAAGTTTTGGCAAGACTATATCAGAAAAAAAGGAGCTTGAAGACTACAGACCTGAAGATATTTCACTATCTCTTCTACGAATGATTTCATACAACATTGGCCAAATATCTTACTTAAATGCATTGCGATTTGGGTTGAAGCGTATCTTTTTCGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGACACTATTTCTTTTGCAGTTCATTTCTGGTCTAAAGGGGCAGCACAAGCAATGTTCTTGCGACATGAAGGATTTTTGGGGGCTTTTGGTGCATTTATGAGCTATGAAAAGCATGGTTTAGATGATCTCATGGTGCATCAGTTAGTTGAAAGGTTCCCAATGGGTGATCCATACACAGGAGGCAAGATTCATGGCCCAACACTTGGAGATTTGAATGAGAAGATTTCATGGATGGAGAAGTTTTTGCAGAAGGGAATGGAGATAACTGCACCTGTCCCAATGACTCCAGCCGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAATTCTCTGCGATCTGATGCAAGTGCTTTAAATGTTGGTGTTCTCCATCTTGTACCAACTTTGGAAGTGTTTCCCTTATTAGCAGACCCAAAAACGTACGAGCCTAATACTATTGATCTCTCAGATCATGGTGAATTAGAATATTGGTTCATCGTTTTGTCCGAGCACTTGCCAGATCTCGTGGACAAGGCTGTAGCAAGCGAAGGCGGAACTGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACTTGGCAAGGTTGACAGAGGAGCCCGCTTCATATGGAAAGTTAAGTTTGGCCAATCTATTGGAAATGAGGGAAGATTGCTTGAGAGAGTTCCAGTTTGTTGATGCCTATAGAAGTATAAAGCATAGGGAAAATGAGGCATCACTTGCTGTTTTACCTGACTTGTTGATGGAGCTTGATAGTATGGACGAGGAAACAAGACTACTTACTCTGATTGAAGGTGTTCTTGCTGCAAATATTTTTGATTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGAACCATTATCGAAATTTACAGAATGAGCCGCAATAAAATGCAGAGACCTTGGCGGGTGGATGATTTTGATGTCTTCAAAGAGAGAATGTTAGGGACTGGAAACAGGAGACCTCCCCCACATAGACGAGCTTTACTTTTTGTTGATAATGCTGGTGCTGACGTTGTTCTAGGGATGCTTCCCCTTGCACGTGAGCTCCTTCGCCATGGAACTGAAGTGGTTCTGGTTGCAAACTCCCTTCCTGCTTTAAATGATGTAACTGCAATGGAGCTTCCTGAAATTGTAGCTGAGGCTGCAAAGCACTGTGACATTCTTAGAAGAGCTGCTGAAGCTGGAGGCTTACTTGTGGATGCAATGAGTAACCCCTTAGATGGTTCTAAAGAAAATGCATCTTCAGCTCCCTTAATGGTTGTTGAGAATGGGTGTGGGAGTCCATGTATAGACTTAAGACAGGTCAGCTCTGAGCTTGCTGCTGCTGCAAAAGATGCTGATTTGATAATTTTGGAAGGGATGGGCAGAGCTCTTCATACCAACCTCAATGCTAGGTTTAAGTGTGATGCTCTGAAGGTTGCAATGGTGAAAAACCAGCGGTTGGCTGAAAAGTTGGTTAAAGGGAACATATACGACTGTGTTTGTAAGTACGAGTCTGGCAGGTGA 2712 0.4325 MAGLVEDQVLGIDGIKDPETEERSKRTQNTVVKEEGMAPTAGSSIHRSSSRPQLDVSKAEIQGNVEEKYPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVNDKRKRSMKERLGISNGNRRNFPILGGRLHFVKFETSKINECLDFIYSKQLHCGGLESHYSDTVADRNVIIKATGGGSYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHIEGQKEFVQIDPHDLFPYLLVNIGSGVSMIKVDGDGNFERVSGTNVGGGTYWGLGRLLTMCKSFDDLLELSQKGDNRTTDMLVGDIYGGMDYSKIGLSASTIASSFGKTISEKKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGAAQAMFLRHEGFLGAFGAFMSYEKHGLDDLMVHQLVERFPMGDPYTGGKIHGPTLGDLNEKISWMEKFLQKGMEITAPVPMTPAGTTGLGGFEVPLSKGNSLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHGELEYWFIVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLTEEPASYGKLSLANLLEMREDCLREFQFVDAYRSIKHRENEASLAVLPDLLMELDSMDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFKERMLGTGNRRPPPHRRALLFVDNAGADVVLGMLPLARELLRHGTEVVLVANSLPALNDVTAMELPEIVAEAAKHCDILRRAAEAGGLLVDAMSNPLDGSKENASSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNLNARFKCDALKVAMVKNQRLAEKLVKGNIYDCVCKYESGR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1294 903 Gene3D - 75 235 - -
Glsi13g1294 903 FunFam Pantothenate kinase 2 222 407 - -
Glsi13g1294 903 MobiDBLite consensus disorder prediction 12 30 - -
Glsi13g1294 903 SUPERFAMILY Actin-like ATPase domain 194 427 IPR043129 -
Glsi13g1294 903 Gene3D - 304 416 - -
Glsi13g1294 903 FunFam Pantothenate kinase 1 83 221 - -
Glsi13g1294 903 FunFam Pantothenate kinase 2 75 235 - -
Glsi13g1294 903 FunFam Pantothenate kinase 2 539 625 - -
Glsi13g1294 903 Pfam Fumble 83 425 IPR004567 GO:0004594|GO:0005524|GO:0015937
Glsi13g1294 903 NCBIfam type II pantothenate kinase 83 426 IPR004567 GO:0004594|GO:0005524|GO:0015937
Glsi13g1294 903 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 704 901 - -
Glsi13g1294 903 PANTHER PANTOTHENATE KINASE 53 795 IPR004567 GO:0004594|GO:0005524|GO:0015937
Glsi13g1294 903 PIRSF PanK_long 37 903 IPR015844 GO:0004594|GO:0015937
Glsi13g1294 903 Gene3D - 540 625 IPR035073 -
Glsi13g1294 903 MobiDBLite consensus disorder prediction 1 55 - -
Glsi13g1294 903 SUPERFAMILY AF1104-like 518 900 IPR036075 -
Glsi13g1294 903 SUPERFAMILY Actin-like ATPase domain 81 222 IPR043129 -
Glsi13g1294 903 Pfam Damage-control phosphatase ARMT1-like domain 608 887 IPR002791 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1294 Glsi-ChrGlsi13 30350241 30377021 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0701 02 4555283 4566568 Glsi13g1294 13 30350241 30377021 CCT
Glsi02g0701 02 4555283 4566568 Glsi13g1294 13 30350241 30377021 ECH
Glsi13g1294 13 30350241 30377021 Glsi13g1294 13 30350241 30377021 ECH