Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00683 ATGGCAGATTTTGCTGATGTTACCCACGATGTTGTGTCCCTCCTCTCTTCTCCCCAAAGGGACTTTCTTCTCAGAAACAACGGCGATCAGATTAAAATTGACAGCTTGAAGGGAAAGCAACTTGGTTTATATTTTTCGGCATCCTGGTGTGGTCCATGTCGAAGGTTCAGTCCAACTTTGGTGGAGGTGTACAATGAGGTTGCACCAAAAGGTGACTTTGAGGTCATTTTTGTCACAGCTGATGAAGATGATGAATCCTTTAGCAGTTACTTTTCCAAGATGCCATGGCTTGCAATCCCATTTTCTGATTCAGAGACTCGCAGTCGCCTTGAGGAATTGTTTCATGTGAGGGGGATTCCTCATCTTGCATTACTTGATGGCACTGGGAAAGTTGTCACTGAAGATGGAGTTGACATCATAAGCGAATTTGGTGTTGAAGGGTACCCCTTTACATCAACAAGGATCCAAGAGCTGAGAGATCAAGAAGAGGAATCTAGGAGGAACCAGTCTGTGAGAACTCTCTTGGTCTCTCGCTCTCCATCTCGTGACTTTGTTATATCACCCGATGGGAAAAAAATACTTGTCTCTGAGCTTGAGGGCAAGACAGTTGGTCTGTATTTCTGTATGAATTTATACGGATCATGTAGTGACTTCACTCCACGGCTCGTGGAGGTTTATAACAAGCTTAAGGCCAAGGGGGAGAACTTTGAGGTTGTGTTGATTTCCCTAGAGGAAGATGAAGAATCATTCAAGGAAGGATTTGAAAGTGCACCTTGGTTATCCTTGCCTTTCAAGGACAAAATCTGTGGGAAGCTGGCTCGGTTCTTTGAGCTTTCAACCCTCCCCACATTGGTTATTATTGGTCCAGATGGGAAAACCCTTCATCCTAATGTTGCTGAAGCTATTGAGGATCATGGTATTGATGCATACCCATTCACTCCTGAAAAGTTTGCTGAGCTTGATGGAATAATGAAGGCCAAGGAGGCATCTCAAACCCTTGAGTCAATTTTGGTGTCTGGGGATCAAGATTATGTCATTGGGAAAGATGGGGTGAAGATTCCAGTGTCAGAATTGAAGGGGAAGGTCGTCCTCCTCTACTTCTCAGCTCACTGGGTATCTGGCATCCCCATGCTTGTGGCCATTGGATCAAGTGGCCAGACTCTCACGAAAGAAGCTCGGGATCTGGTTTCGCTCTATGGCGCAGATGCTTATCCTTTCACTGAGGAGAGAATAAAAGAAATTGAGGCAGAACAAGAAGAGACTGTAAAAGGGTGGCCTGAGAAGGTGACAAATGAAACACATGAGCATGAGCTTGCGTTGACACGCCGCAGGATCTATTTCTGCGATGGTTGCAACAAAGAGGGGCATGCATGGTCGTACTACTGTGGAGAGTGTGACTTTGATCTGCATCCAAAATGTGCATTGGAGGACAAAGATGATGCCAAGGAAGAAGACAAGTCCAAAGATGGATGGGTTTGTGATGGAGAAGTATGCACTAAAAAAGCCTGA 1509 0.452 MADFADVTHDVVSLLSSPQRDFLLRNNGDQIKIDSLKGKQLGLYFSASWCGPCRRFSPTLVEVYNEVAPKGDFEVIFVTADEDDESFSSYFSKMPWLAIPFSDSETRSRLEELFHVRGIPHLALLDGTGKVVTEDGVDIISEFGVEGYPFTSTRIQELRDQEEESRRNQSVRTLLVSRSPSRDFVISPDGKKILVSELEGKTVGLYFCMNLYGSCSDFTPRLVEVYNKLKAKGENFEVVLISLEEDEESFKEGFESAPWLSLPFKDKICGKLARFFELSTLPTLVIIGPDGKTLHPNVAEAIEDHGIDAYPFTPEKFAELDGIMKAKEASQTLESILVSGDQDYVIGKDGVKIPVSELKGKVVLLYFSAHWVSGIPMLVAIGSSGQTLTKEARDLVSLYGADAYPFTEERIKEIEAEQEETVKGWPEKVTNETHEHELALTRRRIYFCDGCNKEGHAWSYYCGECDFDLHPKCALEDKDDAKEEDKSKDGWVCDGEVCTKKA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00683 502 SUPERFAMILY Thioredoxin-like 186 295 IPR036249 -
Cca11g00683 502 Pfam Thioredoxin-like 39 131 IPR012336 -
Cca11g00683 502 Pfam Thioredoxin-like 200 292 IPR012336 -
Cca11g00683 502 SUPERFAMILY Cysteine-rich domain 425 475 IPR046349 -
Cca11g00683 502 Pfam C1 domain 433 474 IPR004146 -
Cca11g00683 502 CDD TryX_like_TryX_NRX 21 150 IPR045870 GO:0004791
Cca11g00683 502 ProSiteProfiles Thioredoxin domain profile. 13 160 IPR013766 -
Cca11g00683 502 PANTHER THIOREDOXIN 372 475 - -
Cca11g00683 502 PANTHER THIOREDOXIN 5 372 - -
Cca11g00683 502 SUPERFAMILY Thioredoxin-like 24 132 IPR036249 -
Cca11g00683 502 Gene3D Glutaredoxin 336 373 - -
Cca11g00683 502 Gene3D Glutaredoxin 15 152 - -
Cca11g00683 502 Gene3D Glutaredoxin 175 313 - -
Cca11g00683 502 PANTHER NUCLEOREDOXIN 1-2-RELATED 372 475 - -
Cca11g00683 502 PANTHER NUCLEOREDOXIN 1-2-RELATED 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00683 Cca-Chr11 11460911 11463931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00683 K17609 - gmx:100809224 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00683 11 11460911 11463931 Cca11g00683 11 11460911 11463931 ECH