Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1085 ATGAAACAGGGCACTGAAAGTGTTCTGTCTGAAGACTCCAGAATTTTGCTTTACCTCCCTGAAGAGCAATCTGGTGGGCCAACGCCTGTAATCCTATGGGTGTGCATGTTCAAGTTAGGATCTCTTGCCAAGCTAGTTTACTTCACAAAAGATGATGATCATATCGTTGATGGTGAGGAGGGGATATCTCATAGAAAGGCTTTGGGGAAATCCAACGGCAGCAAGCAATATCCTGTACTTAACGGAAGGCtcaattttaagaagtttgaaACAAGCAAGATAAATGATTGCTTAGAGTTTATCAAGTCCATGAAACTTCATTTTGGAGGTAGTCAGCCACAAGAAAATCCTGGAAGTCAGCCAATAGCTGTTAAGGCCACGGGTGGTGGTGCATACAAATATGCAGACCTCTTCAAGGAAAGACTAGAAATCATTCTTGACAAGGAAGATGAAATGGATTGTCTTGTTGCAGGAGCAAATTTTCTTCTTGAGGTGGTCCACCAGGAAGCATTTACCTATATGGGTGATCAAAAGCAATTTGTGCAGATTGACCAGAATGATCTGTATCCCTATCTTCTTGTTAATATTGGGTCTGGTGTTGGCATGATCAAGGTGGAAGGAGAGGGAAAATTTGAGAGAGTTAGTGGAACAAGTATAGGCGGAGGCACTTTCTGGGGTTTAGGAAAGCTTTTAACCAAGTgcaagagTTTTGATGAGTTGCTGGAATTAAGTTATCGAGGGAACAACAGAGCAGTAGATATGCTTGTTGGAGATATTTATGGTGGAATGGACTATTCAAAGATAGGTCTTGCATCCACTGCAATAGCCTCTAGTTTTGGAAAGGCAATTTCTGATAATAGGGAGCGTGAAGATTACAAACCTGAAGATATTGCTCGATCTCTTCTAAGAATGATCTCAAATAATATTGGACAGATCTCTTACTTAAATGCCCTTCGCTTTGGGCTGAAGAGGATTTTTTTTGGTGGATTTTTTATTCGGAGGCATCCTTTTACAATGGACACATTATCTGTTGCTGTAAATTTCTGgtCTAAAGGTGAGGCTAAGGCAATGTTTTTGCGGCATGAAGGGTTTCTCGGAGCTGTAGGTGCCTTCATGAGTTCTGATAAACATGGCCTTAAGGAATTATTGGCCAATCAAGTGGTGCAAAGATCTCCCAGCAAGTTATCCTTTGCCGTGGATAAAATAATGCATGGTCCACCAGATGGAGAGTTTAATGGAGATGAAAGTATAGAGTGCAGTGTCTATGCTGCTTAG 1275 0.4063 MKQGTESVLSEDSRILLYLPEEQSGGPTPVILWVCMFKLGSLAKLVYFTKDDDHIVDGEEGISHRKALGKSNGSKQYPVLNGRLNFKKFETSKINDCLEFIKSMKLHFGGSQPQENPGSQPIAVKATGGGAYKYADLFKERLEIILDKEDEMDCLVAGANFLLEVVHQEAFTYMGDQKQFVQIDQNDLYPYLLVNIGSGVGMIKVEGEGKFERVSGTSIGGGTFWGLGKLLTKCKSFDELLELSYRGNNRAVDMLVGDIYGGMDYSKIGLASTAIASSFGKAISDNREREDYKPEDIARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRRHPFTMDTLSVAVNFWSKGEAKAMFLRHEGFLGAVGAFMSSDKHGLKELLANQVVQRSPSKLSFAVDKIMHGPPDGEFNGDESIECSVYAA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1085 424 PANTHER PANTOTHENATE KINASE 40 424 - -
Ssu5g1085 424 Pfam Fumble 40 372 IPR004567 GO:0004594|GO:0005524|GO:0015937
Ssu5g1085 424 SUPERFAMILY Actin-like ATPase domain 145 372 IPR043129 -
Ssu5g1085 424 PANTHER PANTOTHENATE KINASE 40 424 IPR004567 GO:0004594|GO:0005524|GO:0015937
Ssu5g1085 424 SUPERFAMILY Actin-like ATPase domain 40 168 IPR043129 -
Ssu5g1085 424 Gene3D - 40 169 - -
Ssu5g1085 424 Gene3D - 170 354 - -
Ssu5g1085 424 TIGRFAM panK_eukar: pantothenate kinase 40 373 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1085 Ssu-Chr5 34455701 34463286 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1085 K09680 K24265 gmx:100808162 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1085 5 34455701 34463286 Ssu5g1085 5 34455701 34463286 ECH