Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00854 ATGGCTGCTTCTTTAGAAAAGGAACAGAAACAAAATCAAGTTATTGGAATTATCGAAGAAGAGAAATTGCAGAAGCAGGAGAGTAAGAGCAGCAATAAAATCACACGCACGCAAGTGGAGAGCGGCGAAGGGGAAAGAGAGATGACTCCTACGGCTTCCAATTCCATGCACAGGTCTGGTTCGAGGCCTCAACTTGATGTGAGCAAAGCTGAGATTCAAGTTAATGAGGAGGAGAAGTATCCAACCATTTTGTTGCCTAATCAATCTGATGATTTGTCTCACCTAGCACTTGACATTGGAGGATCTCTGATAAAGTTGGTGTACTTTTCAAGACATGAAAACCAATCAGTGGATGATAAAAGGAAGAGAAGTGTAAATGAGCGACTGGGGTTTTCTAAGGGTAACAGGAGAAGCTACCCTATCCTTGGTGGAAGACTACACTTTGTAAAGTTTGAAACGAGAAAGATTAATGAGTGCTTGGATTTCATTCATTCAAAGCAGCTTCACTGTGGTGGGTTGGAGCCATGTTACTCGGATGGTGTGACTGACCAGAATGGCATAATTAAGGCTACTGGTGGTGGAGCATACAAGTACGCTGACCTTTTCAAAGAAAGACTTGGAGTTAGTCTTGACAAAGAAGATGAAATGGACTGCCTTGTGGCTGGAGCTAACTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTCACACACATGGAAGGCCAAAAAGAGTTTGTTCAAATTGAACCCAATGATTTATTCCCTTATCTTCTGGTTAATATTGGATCTGGTGTTAGTATGATCAAGATTGGCCTATCAGCTTCCACTATTGCTTCAAGTTTTGGCAAAACGATATCAGAAAAAAAGGAGCTTGAAGAATACAGACCTGAAGATATATCACTTTCTCTTCTAAGGATGATTTCATACAATATTGGTCAGATAGCTTACTTGAATGCATTGCGATTTCGGTTGAAGAGAATCTTTTTTGGTGGATTTTTTATAAGGGGTCATGCCTATACCATGGACACTATTTCTTTTGCTGTACATTTCTGGTCAAATGGAGAAGCACAAGCAATGTTCTTGCGACATGAAGGATTTCTTGGAGCTTTAGGTGCATTTATGAGTTATGAGAAGCATGGTTTAGATGACCTCATGGTTCATCAGTTGGTGGAAAGGTTTCCAATGGGTGCTCCGTATACAGGAGGCAAGATTCATGGCCCACCACTTGGAAATTTGAATGAGAAGGCAAAGTTTTCAATGCAGATTTCGTGGATGGAGAAGTTTTTGCGGAAGGGAACTGAGATTACTGCACCTGTGCCAATGACACCACTTGCTGGAACTACTGGACTTGGGGGTTTTGAGGTTCCTTTGTCAAAAGGAAGTACTCTGCGATCTGATGCAAGTGCTCTAAGTGTCGGTGTTCTCCACTTAGTACCAACATTGGAGGTGTTTCCATTACTAGCAGACCCAAAATTGTATGAACCAAATACAATTGACCTATCAGATAACAGTGAACTAGAATATTGGCTCACCATTCTATCAGAGCATTTGTCAGATCTTGTGGACAAGGCAGTAGCAAGTGAAGGTGGAACTGATGATGCCAAGAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCAGCCCACTTGGCAAGGTTGATGGAGGAGCCTTCGGCATATGGGAAGTTAGGGCTCGCCAACCTCTTGGAAATGAGGGAAGAATGCTTGAGAGAATTCCATTTTGTTGATGCCTACAGAAGTATAAAGCAGAGGGAAAATGAGGCATCGCTTGCTGTTTTACCTGACTTGCTGGTGGAACTTGATAGTATGGATGAGGAATCAAGACTGCTTACACTAATTGAAGGTGTTCTTGCGGCAAACATTTTTGACTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAACAAAATGCGTAGACCTTGGCGGGTGGATGATTTTGATGACTTTAAAGAGAGAATGTTAGGGGCCAAAAACAAGAAAAATTCTCGGCACAAGAGAGCTTTACTTTTTGTAGACAACTCAGGTGCTGACATTGTTCTAGGGATGCTTCCTCTAGCTAGGGAACTCCTCCGCCGGGGAACTGAACTTGACTGCTATACAACCCTGGCTGATGCTTATAACTTCTATGTTACTGCAATAACTACAGATGTGTTCTTCCAGGTAGTGTTGGTTGCAAACTCTCTTCCTGCTTTAAATGATGTAACTGCAATGGAGCTTCCTGACATCATAGCTGAGGCTGCCAAGTTAATTTTGGAAGGGATGGGTAGAGCTCTTCATACTAACCTCAATGCGCGGTTTAAGTGTGATGCTTTAAAGCTTGCGATGGTGAAAAATCAGAGATTGGCTGAAAAATTGGTTAAAGGGGACATATACGACTGTATTTGCAAATACGAACCTGTTAGTTGA 2457 0.4204 MAASLEKEQKQNQVIGIIEEEKLQKQESKSSNKITRTQVESGEGEREMTPTASNSMHRSGSRPQLDVSKAEIQVNEEEKYPTILLPNQSDDLSHLALDIGGSLIKLVYFSRHENQSVDDKRKRSVNERLGFSKGNRRSYPILGGRLHFVKFETRKINECLDFIHSKQLHCGGLEPCYSDGVTDQNGIIKATGGGAYKYADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIEPNDLFPYLLVNIGSGVSMIKIGLSASTIASSFGKTISEKKELEEYRPEDISLSLLRMISYNIGQIAYLNALRFRLKRIFFGGFFIRGHAYTMDTISFAVHFWSNGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGNLNEKAKFSMQISWMEKFLRKGTEITAPVPMTPLAGTTGLGGFEVPLSKGSTLRSDASALSVGVLHLVPTLEVFPLLADPKLYEPNTIDLSDNSELEYWLTILSEHLSDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPSAYGKLGLANLLEMREECLREFHFVDAYRSIKQRENEASLAVLPDLLVELDSMDEESRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDDFKERMLGAKNKKNSRHKRALLFVDNSGADIVLGMLPLARELLRRGTELDCYTTLADAYNFYVTAITTDVFFQVVLVANSLPALNDVTAMELPDIIAEAAKLILEGMGRALHTNLNARFKCDALKLAMVKNQRLAEKLVKGDIYDCICKYEPVS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00854 818 SUPERFAMILY AF1104-like 474 816 IPR036075 -
Vian4g00854 818 Gene3D - 267 354 - -
Vian4g00854 818 MobiDBLite consensus disorder prediction 1 66 - -
Vian4g00854 818 FunFam Pantothenate kinase 2 86 246 - -
Vian4g00854 818 PANTHER PANTOTHENATE KINASE 736 765 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vian4g00854 818 Coils Coil 817 818 - -
Vian4g00854 818 SUPERFAMILY Actin-like ATPase domain 93 233 IPR043129 -
Vian4g00854 818 MobiDBLite consensus disorder prediction 47 66 - -
Vian4g00854 818 Pfam Fumble 94 269 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vian4g00854 818 FunFam Pantothenate kinase 2 494 580 - -
Vian4g00854 818 Gene3D - 495 580 IPR035073 -
Vian4g00854 818 Pfam Damage-control phosphatase ARMT1-like domain 565 713 IPR002791 -
Vian4g00854 818 FunFam Pantothenate kinase 1 94 232 - -
Vian4g00854 818 FunFam Pantothenate kinase 2 255 364 - -
Vian4g00854 818 Gene3D - 86 246 - -
Vian4g00854 818 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 659 759 - -
Vian4g00854 818 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 760 816 - -
Vian4g00854 818 SUPERFAMILY Actin-like ATPase domain 205 375 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00854 Vian-Chr4 11649122 11672194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00854 K24265 - gmx:100800121 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01198 1 12893890 12908144 Vian4g00854 4 11649122 11672194 ECH
Vian4g00854 4 11649122 11672194 Vian4g00854 4 11649122 11672194 ECH
Vian1g01198 1 12893890 12908144 Vian4g00854 4 11649122 11672194 PCT