Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0781 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g01145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0782 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g01144 . Car07g01955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2834 . . . . . . . Mtr8g1996 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g4754 . . . Tsu04g02853 . . . . . . . . . . . .
Vvi1g0783 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01330 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g5167 . . . . . . . Mtr8g3660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g0455 . . . Tsu02g00264 . . . . . . . . . . . .
Vvi1g0784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0787 . . . . . Adu03g03761 . . . Aev03g0563 . Ahy13g3685 . Aip03g04128 . . . . . . . . . Bach10g00929 . . . Bva11g01142 . . . . . . . Dod04g0063 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g01774 . . . . . . . . . Lja4g2806 . Mal5g2843 . Mepo1g02615 . Mesa29g02805 . . . Mtr8g1992 . . . . . . . . . Pste7g00665 . . . . . . . Pvu3g0626 . . . Seca12g03661 . Spst3g02562 . . . . . Tpr4g4756 . Trre15g02044 . Tsu04g02851 . . . Vifa4g01816 . Vimu11g03229 . Viun3g03248 . . . .
Vvi1g0788 . . . . . . . Aed7g1641 . . . . . . . . . . . Apr3g0795 . . . . . . . . . Car07g01957 . Cca11g00680 . . . . . . . . . . Gma08g02692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g1073 . Sto6g4326 . . . . . . . . . . . . . . . . . .
Vvi1g0789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g5188 . . . . . . . Mtr8g3683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g0433 . . . Tsu02g00243 . . . . . . . . . . . .
Vvi1g0790 . . . . . . . Aed7g1642 . Aev03g0562 . Ahy13g3686 . Aip03g04129 . . . . Apr7g1638 Apr3g0796 . . . . . . . Bva11g01141 . Car07g01958 Cca06g00822 Cca11g00679 . . . . . . . . Gma02g00315 Gma01g00284 Gma08g02693 . Gso2g0296 Gso2g0296 Gso2g0296 . . . . Lal23g1052 . Lal15g0486 . . . . . . . . . . . . . . . . . . . . Mal6g0131 . . . . . . . Mtr5g1404 . . . . . . . Psa2g2372 . . . . . . . . . . . . . . . . . Ssu2g1779 Ssu5g1072 . Sto6g4327 Tpr2g1727 . . . Tsu05g01466 . . . . . . . . . . . . .
   
Previous Page 79 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0781 Chr1 7943322 7945580 -
Bva Bva11g01145 Chr11 12560637 12561630 +
Vvi Vvi1g0782 Chr1 7954942 7956741 -
Bva Bva11g01144 Chr11 12559053 12561630 +
Car Car07g01955 Chr07 22470196 22472939 -
Mal Mal5g2834 Chr5 84192554 84195151 -
Mtr Mtr8g1996 Chr8 29760716 29763277 +
Tpr Tpr4g4754 Chr4 56081220 56084308 -
Tsu Tsu04g02853 Chr04 34440451 34443797 +
Vvi Vvi1g0783 Chr1 7959466 7960266 -
Bva Bva08g01330 Chr08 6949887 6951128 +
Mal Mal7g5167 Chr7 120816110 120819088 -
Mtr Mtr8g3660 Chr8 47191925 47195466 -
Tpr Tpr3g0455 Chr3 4693653 4696651 +
Tsu Tsu02g00264 Chr02 2249017 2251990 +
Vvi Vvi1g0784 Chr1 7963567 7967564 +
Vvi Vvi1g0785 Chr1 7972480 7972665 -
Vvi Vvi1g0786 Chr1 7978069 7979217 -
Vvi Vvi1g0787 Chr1 7987554 7987940 +
Adu Adu03g03761 Chr03 126176239 126178759 +
Aev Aev03g0563 Chr03 4146075 4148465 -
Ahy Ahy13g3685 Chr13 135534976 135538634 +
Aip Aip03g04128 Chr03 125050006 125054239 +
Bach Bach10g00929 Chr10 6590088 6592970 +
Bva Bva11g01142 Chr11 12551682 12554683 -
Dod Dod04g0063 Chr04 734224 737647 -
Lasa Lasa4g01774 Chr4 353374186 353376627 +
Lja Lja4g2806 Chr4 46736851 46740594 +
Mal Mal5g2843 Chr5 84375701 84379593 +
Mepo Mepo1g02615 Chr1 27552828 27556309 +
Mesa Mesa29g02805 Chr29 38670098 38673110 +
Mtr Mtr8g1992 Chr8 29726031 29729158 -
Pste Pste7g00665 Chr7 6080852 6083819 +
Pvu Pvu3g0626 Chr3 8186159 8189466 -
Seca Seca12g03661 Chr12 93500467 93503622 +
Spst Spst3g02562 Chr3 73839507 73842353 -
Tpr Tpr4g4756 Chr4 56097213 56100674 +
Trre Trre15g02044 Chr15 16562138 16564825 +
Tsu Tsu04g02851 Chr04 34418267 34421065 -
Vifa Vifa4g01816 Chr4 514028153 514030534 -
Vimu Vimu11g03229 Chr11 52165224 52167928 +
Viun Viun3g03248 Chr3 39314628 39317371 +
Vvi Vvi1g0788 Chr1 7989003 7990025 +
Aed Aed7g1641 Chr7 19668894 19671939 +
Apr Apr3g0795 Chr3 20823723 20826528 +
Car Car07g01957 Chr07 22503368 22506540 +
Cca Cca11g00680 Chr11 11389533 11393301 -
Gma Gma08g02692 Chr08 42150975 42154114 +
Ssu Ssu5g1073 Chr5 33872923 33874516 -
Sto Sto6g4326 Chr6 45953907 45959154 +
Vvi Vvi1g0789 Chr1 7999869 8001320 -
Mal Mal7g5188 Chr7 121107877 121109442 +
Mtr Mtr8g3683 Chr8 47373718 47376023 +
Tpr Tpr3g0433 Chr3 4534460 4536807 -
Tsu Tsu02g00243 Chr02 2067908 2069673 -
Vvi Vvi1g0790 Chr1 8004150 8007646 -
Aed Aed7g1642 Chr7 19672368 19678215 -
Aev Aev03g0562 Chr03 4141127 4145145 +
Ahy Ahy13g3686 Chr13 135538689 135542491 -
Aip Aip03g04129 Chr03 125054742 125058157 -
Apr Apr7g1638 Chr7 23539591 23544162 +
Apr Apr3g0796 Chr3 20827474 20831829 -
Bva Bva11g01141 Chr11 12546459 12551439 +
Car Car07g01958 Chr07 22507347 22512112 -
Cca Cca06g00822 Chr06 21244213 21248419 +
Cca Cca11g00679 Chr11 11379544 11389044 +
Gma Gma02g00315 Chr02 3292959 3298104 +
Gma Gma01g00284 Chr01 3214668 3219334 -
Gma Gma08g02693 Chr08 42154867 42160649 -
Gso Gso2g0296 Chr2 3194048 3198006 +
Gso Gso2g0296 Chr2 3194048 3198006 +
Gso Gso2g0296 Chr2 3194048 3198006 +
Lal Lal23g1052 Chr23 12268550 12273272 +
Lal Lal15g0486 Chr15 3315954 3321856 -
Mal Mal6g0131 Chr6 1867969 1875682 -
Mtr Mtr5g1404 Chr5 14707514 14715218 -
Psa Psa2g2372 Chr2 273249596 273252569 -
Ssu Ssu2g1779 Chr2 68519946 68524265 +
Ssu Ssu5g1072 Chr5 33867290 33871935 +
Sto Sto6g4327 Chr6 45960115 45966934 -
Tpr Tpr2g1727 Chr2 20423227 20432219 -
Tsu Tsu05g01466 Chr05 13945213 13949005 -
Car Car07g01955 Chr07 22470196 22472939 -
Mal Mal7g5167 Chr7 120816110 120819088 -
Mtr Mtr8g3660 Chr8 47191925 47195466 -
Tpr Tpr3g0455 Chr3 4693653 4696651 +
Tsu Tsu02g00264 Chr02 2249017 2251990 +