Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03658 ATGATTTTCTTAGCGACCAAGAAAAATCGAGAAAGCTGGCAAAATTTCGCCGCTCCAACTCTAAGTCTACAAGTAGTCCTTGCATTTCAAGTTCTGTTGTGTTGCCCACGCTTAGCTTTTTTTCGTTTCCGTTGTTCTGTGTGCTCACTTACCTGTGACACTACGATGGCAGATTCAGCTGATGTTAGCCACGATGTTCACTCTCTCCTCTCTTCCCCCGAGAGGGACTTTCTTCTTCGGAACAACGGCGATCAGGTTAAAATTGACAGCTTGAAGGGAAAAAAGCTTGGGATATATTTTTCAGCATCCTGGTGTGGTCCATGTCGAAGATTCACCCCAACTTTGGTGGAGGTGTACAATGAAGTGTCTCCAAAAGGTGACTTTGAGGTCATTTTTGTCACAGCTGATGAAGATGATGAGTCCTTTAAGAGCTACTTTTCCAAGATGCCATGGCTGGCTATCCCATTTTCTGATTCAGAGACACGCAGTCGCCTTGATGAATTGTTTCATGTGAGGGGGATTCCCCATCTTGCATTACTTGATGAAACTGGGAAAGTTGTCACTGAAGATGGAGTTGAGATTGTCAGTGAATATGGGGTTGAAGGTTACCCTTTTACATTAGCAAGGATCCAAGAATTGAAAGATCAAGAAGAGGAAGCTAAGAGGAACCAATCCTTGAGATCTATCTTGGTCTCTCATTCCCGTGACTTTGTGATATCATCTGATGGAAAGAAAGTCCTTGTCTCTGAGCTTGAGGGAAAGACAGTTGGTCTGTATTTCTGTTCGAAGTCATACAAATCATGCAATGACTTTACACCACAGCTTGTGGAGGTTTATGAGAAGCTGAAATCAAAGGGGGAGAACTTTGAGGTTGTTTTGATACCCCTAGAAGATGATGAAGAATCATTCAAGGAAGAATTAGAAAGTGTTCCTTGGTTATCCTTGCCTTACAAGGATAAAAGCTGTGAGAAGCTAATTCGGTACTTTGAGCTCTCAGCCCTCCCCACTTTGGTTATTATTGGGCCAGATGGGAAAACTTTTCATTCTAACGTTGCTGAGGCTATTGAGGATCATGGGATTGCTGCGTACCCATTCACTCCTGAAAAGTTTGCTGAGCTCAATGAAATTACGAAGGCCAAGGAGGCAGCTCAAACCCTTGAGTCAATTTTGGTGTCTGGGGATCGAGATTTTGTCATTGGAAAAGATGGGGTGCAGATTCCAGTGTCAGAATTAAAGGGGAAGAACATCCTCCTCTACTTCTCAGCCCACTGGTGTCCTCCATGCCGTGCATTTCTTCCAAAACTCACTGATGCGTATCATAAGATTAAGGCCAAGGACAATGAATTTGATGTGATTTTCATTTCAAGCGACAGGGATCAAGCCTCCTTTGATGGATACTTTGCAGAAATGCCATGGTTGGCACTTCCCTATGGTGACTCAAGGAAGGCAATCCTGAGTCGCAAATTCAAGGTATCTGGCATCCCCATGCTTGTGGCCATTGGATCAAGTGGCCGGATTGTCACAAAAGAAGCTCGAGATTTGGTTTCACTTTATGGGGCAGATGCTTATCCTTTCACTGAGGAGAGAATAAAAGAAATAGAAGCAGAAAATGAAGAGACTGCAAAGGGGTGGCCTGAGAAGGTGATACATGAAACACATAAGCATGAGCTTACATTGACGCGTCGCAGGGTTTATTACTGTGATGGTTGTGAGGACGAGGGACATATATGGTCATACTACTGTGAAGAGTGTGACTTTGATCTCCATCCAAAATGTGCATTGGAAGACAAAGGAAGCAAAGATGATGCCAAGGAAGAAGAGAAGTCCAAAGATGGATGGGTTTGTGATGGAGAAGTCTGCTCTAAAGCCTGA 1872 0.4375 MIFLATKKNRESWQNFAAPTLSLQVVLAFQVLLCCPRLAFFRFRCSVCSLTCDTTMADSADVSHDVHSLLSSPERDFLLRNNGDQVKIDSLKGKKLGIYFSASWCGPCRRFTPTLVEVYNEVSPKGDFEVIFVTADEDDESFKSYFSKMPWLAIPFSDSETRSRLDELFHVRGIPHLALLDETGKVVTEDGVEIVSEYGVEGYPFTLARIQELKDQEEEAKRNQSLRSILVSHSRDFVISSDGKKVLVSELEGKTVGLYFCSKSYKSCNDFTPQLVEVYEKLKSKGENFEVVLIPLEDDEESFKEELESVPWLSLPYKDKSCEKLIRYFELSALPTLVIIGPDGKTFHSNVAEAIEDHGIAAYPFTPEKFAELNEITKAKEAAQTLESILVSGDRDFVIGKDGVQIPVSELKGKNILLYFSAHWCPPCRAFLPKLTDAYHKIKAKDNEFDVIFISSDRDQASFDGYFAEMPWLALPYGDSRKAILSRKFKVSGIPMLVAIGSSGRIVTKEARDLVSLYGADAYPFTEERIKEIEAENEETAKGWPEKVIHETHKHELTLTRRRVYYCDGCEDEGHIWSYYCEECDFDLHPKCALEDKGSKDDAKEEEKSKDGWVCDGEVCSKA. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03658 623 Pfam C1 domain 552 593 IPR004146 -
Seca12g03658 623 ProSitePatterns Thioredoxin family active site. 417 435 IPR017937 -
Seca12g03658 623 ProSiteProfiles Thioredoxin domain profile. 68 215 IPR013766 -
Seca12g03658 623 Gene3D Glutaredoxin 228 366 - -
Seca12g03658 623 Gene3D Glutaredoxin 387 526 - -
Seca12g03658 623 Gene3D Glutaredoxin 70 206 - -
Seca12g03658 623 ProSiteProfiles Thioredoxin domain profile. 377 535 IPR013766 -
Seca12g03658 623 SUPERFAMILY Thioredoxin-like 79 187 IPR036249 -
Seca12g03658 623 SUPERFAMILY Thioredoxin-like 239 348 IPR036249 -
Seca12g03658 623 PANTHER THIOREDOXIN 59 359 - -
Seca12g03658 623 Pfam Thioredoxin-like 94 186 IPR012336 -
Seca12g03658 623 Pfam Thioredoxin-like 414 506 IPR012336 -
Seca12g03658 623 Pfam Thioredoxin-like 253 345 IPR012336 -
Seca12g03658 623 Coils Coil 207 227 - -
Seca12g03658 623 CDD TryX_like_TryX_NRX 396 525 IPR045870 GO:0004791
Seca12g03658 623 SUPERFAMILY Thioredoxin-like 399 509 IPR036249 -
Seca12g03658 623 CDD TryX_like_TryX_NRX 76 205 IPR045870 GO:0004791
Seca12g03658 623 SUPERFAMILY Cysteine-rich domain 544 594 IPR046349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03658 Seca-Chr12 93430427 93433729 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03658 K17609 - gmx:100809224 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03658 12 93430427 93433729 Seca12g03658 12 93430427 93433729 ECH